RnoINT0048838 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107050392-107050916:-
Coord C1 exon
chr10:107050776-107050916
Coord A exon
chr10:107050563-107050775
Coord C2 exon
chr10:107050392-107050562
Length
213 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
TCACCCTGGCCGTTCTCCAGGCC
3' ss Score
7.51
Exon sequences
Seq C1 exon
GTCCAAGAGGCAAAAATCACAGAAACAAAGATCAATGAGGCGCGAGAGAACTACCGCCCAGCGGCCGCAAGGGCCTCCCTGCTCTACTTTATCCTGAACGACCTCAACAAAATCAACCCCATCTACCAGTTCTCTCTCAAG
Seq A exon
GTCAGCCACCCGGGGCACGAGGCCAGGGGACCAAGTCGACAGGCCACCCCAAGGTCAGGGAGCACACAAGATGGCAGGAACCAGAGAGTGGTGCTGTGGGAGTGGGTCTTTCCGCCCTACCTTTCCCCCACGGCACCCCAGTCAGAATTAACCAGAAGCTGCCGGGGACCGCAGCCGCAGCTGCAGAATCAGCTCACCCTGGCCGTTCTCCAG
Seq C2 exon
GCCTTCAATGTGGTGTTTGAGAAAGCCATCCAGAAGACCCCGCCCGCCGAGGAGGTGAGGCAGCGCGTGATAAACCTGACGGACGAGATCACCTACTCTGTGTACATGTACACGGCACGCGGGCTCTTCGAGCGGGACAAGCTCATCTTCTTGGCTCAAGTCACCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAAGAGGCAAAAATCACAGA
R:
AAGAAGATGAGCTTGTCCCGC
Band lengths:
293-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]