MmuINT1008800 @ mm10
Intron Retention
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118040982-118041547:-
Coord C1 exon
chr11:118041407-118041547
Coord A exon
chr11:118041153-118041406
Coord C2 exon
chr11:118040982-118041152
Length
254 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TCACACTGGCCGTTCCCCAGGCC
3' ss Score
7.07
Exon sequences
Seq C1 exon
GTCCAAGAGGCCAAAATCACAGAAGTAAAGATCAATGAGGCACGAGAGAACTACCGCCCAGCCGCAGAAAGGGCCTCCCTTCTCTACTTTATCCTGAACGACCTCAACAAGATCAACCCCATCTACCAGTTCTCGCTCAAG
Seq A exon
GTCAGACACACACAGACACACACAGACACACACACACAGACACACACACAGGGCACAAGGCCAGGGGTCCGAGTCCGTAGGTCTCGACTACACATCAGGGAGCACAGGAGACGGCAGGAGCCAGAGGGTGGTGCTGTGGGAGTGGGTCTCTCCGCCCTACCTTTCCCCCAGCACCCCAGTCAGAATTAACCAGAGGCTACTGGGGATGGGGTTGCAGCTGCAGCATCCCCATGTTCACACTGGCCGTTCCCCAG
Seq C2 exon
GCCTTCAACGTGGTGTTTGAGAAAGCCATCCAGAAGACGGCGCCAGCCGACGAGGTGAAGCAGCGCGTGATAAATCTGACGGACGAGATCACCTACTCTGTGTACATGTACACGGCACGCGGGCTCTTCGAGCGGGACAAGCTCATCTTCTTGGCTCAAGTCACCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987:ENSMUST00000132685:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAAGAGGCCAAAATCACAGA
R:
AAGAAGATGAGCTTGTCCCGC
Band lengths:
293-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types