RnoINT0048702 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145823496-145829638:-
Coord C1 exon
chr6:145829498-145829638
Coord A exon
chr6:145823667-145829497
Coord C2 exon
chr6:145823496-145823666
Length
5831 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
CTTTAACATTGACCTTCCAGGCT
3' ss Score
6.42
Exon sequences
Seq C1 exon
GTGATAGAGGCCAGAGAAAATGAGAGAAAAATCAACGAGACCCGTGAGTGCTACAGACCGGTGGCAGCAAGAGCCTCCCTTATGTACTTTGTTATCAGTGACCTCCGGAAAATCAACCCCGTCTACCAGTTCTCTCTGAAG
Seq A exon
GTAATGCTGAACAGGCTAAGGAAGATCCGTAACTCCAGAAAGCCTGATTTTTATCCCTAGAAATTAGGGATTTATTTCTCAGCAGTCCTGGCAGGAAGGGAGAAAGAATTGGGCAAAGCATTTTAAGTAACGATTACGTATATCAGATTCCCTAAAACATTCCAAGAAAGCATTTCAGTTTTCTCCTCACCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAAGAAAAAGGTAACCTTTTTAGATTTCAAACACACTGCCCCCAAATTCATGTTCTGTGATTATTAGAGTCTGGATTTCAGCTTGTGCTGGTTTGACTCCAAAAGCCAGGCTCTGTCTGCCATGCTGCTCTGTCTTTGAGAAGGATCTTTAATTCTTGCTGTCAGTTTTGAAACAAATCCTTAACAAGACCCATCATCATGCAGGTGGCTTGTCTCTGGGTGTGTAGGTGGGTTTGTTTGTTTTGTTGGTTTTGTTTTCTGAGACAGGGTTTCCTCTCTGTATCCCTGGGTGTTCTGGATCTCAGTCTGTAGTCCAAGCTAGCCTCCAACTCTGATATCCACTTTCCTTGCCTCCGTAGTGCTGGAACTAAACGTGTGGTATCCCCTCCCTAGCGTCTTGTTTTATTTTTAATAAAAACATTAGAAGTGGGCAAAAGGACTCATTAGACACTGAAAAAGAAAAGAATCTAAAGGCGGGACTACCAGGGAAGCAGTGGATGAGGGAGAAGAGGAGAAGGAAAGAGAATCAACTAACTATACTTTGTTCAAAACACCATAAGATAATGCCATGCACACTCACCATAAAGATTTCTAAATAATAAAAGCATCTAAAAAAGCTACCATACAGCCATGTGGAATCATCAGGTAGCTTTATTTGAGTGTGTTTTATGTAAAATTTTCTAGTTTGATATTTATTTCTCTATAAGGAGTAAGTGTTATTTAAAACACTCGAAATAACATGTCCATAATTGCTGTGGTGTCAATACCTTAAACACTACATTAATTTCAAAATTTTAAGTAATTGACTCAGCAGATCAAGGCACCAATAAGTCTGACAGCCTGAGTTTAATCTCCTGAACCTACCTAGTAGAAGGGAAAAATAATTCCACAAGTAGCCCTCTAACCTCCACATATGGGTAGACATACATATATCTTTAATAAACACATAGGCTTATAAAAAACCACTATACATATAGTAATAAATAGGAGAGGCACAGGCAAGGCCATTCAGAGGAAGTATTGCTTGAGGAGGAGCTTGAAGGAAAGCACTAACAAGTGTTGGGTAAGCAGGGCTGTTTGAGGCATGAAAGGGCTGGAAATTGCATGCTGTAAAGATGTATCTCTGGCCAGAGGGTAATGAGCATGAGGACAGAGGTTACAAGAGACAGAACCCAAGAGAAAGGTACGTTAGACTTGATCCTATAGAGCTTCTCAGGCTGTTAAGAAATCTATATTTTCTGTGCATCAAGAAGCCAGTGGAAGGCCTGGAGCAGATAGATGGCTGGGGTGGTGGCAAAAGAGTCAGAAGTGAACATATGATTTGAATCTACAACCTCAGGCCCTTGGAGATGGTGTATCAGTGAGGTAAGTATAACTAGCATGCCTCCTGCTATTAACTTTATATAACTGGTATGCATCCTACTATGTAACTTCTTTATGTAACAGGCATGCCTCCTACTATGTAACTTTATGTAACTGGCATGCCTCCTACTATGTAACTTTATGTAACTGGCACAGTGAAAGCCTTGACAAGAGAAGTGTATGGCAAGATTTCACAACAGCAACAATATATAAAGAGAATGAGAAAGCTAAACCAGTAATGCCTGCCTAGATTAACAGGTGCCCAGCTAGAGCTAAGGTCTGGCAAGAAAACTATAGAGCACTCATGAATCTCGCAGTTAAACTCCTCCAGAACAGTGACACATAGGATCCATCTACAAAAATAAAATTCATCCTATCATGTTTAAGGTTTATAGTTCTCACAAGGCACTGTTTGGAAAATGAAGAGACAAACTATGGACTAGCAAAACTAAAACTCACAATACGTGTTTCTAAGAAAGGATTTGTTAGGTATAAGAAGAACACAGACAACTCAATGATGTAGGCTAGATAGATGTGCAGAGGAAGACATAAGCATGCCTCATAGAACCTGAAAATGTCTAACAGTCATTACAGAAATGTCAAATCAAGGCCAACCTTACTCTATGCCCAGGGTCTTGCTCTATACCCAGTAGGGACTGCTAAAATTTCAGCAGTTCTAAGGCACCACAGCACCTTCACATTGCTGGGAAAATGAAGCTTCAGAAGTCATTTTGGAGGACACTTTGGTGACTCCCTGCTAGGTACAGGGCACAGTTCCAATGTGACCTCACATTTTTACTCTAGGTATGGGCCTGAGGGAAATATGAATACAAAGAATCACACAAAATTTTTATCACAATGCTCACAGACATTTTTCCTACATCAAAATTTGTAAATAACCCAAAGGAATTGCTCAAAAATATAAACAAACAAATAAAATATATACAGGTGCACAAATTTGTTTATCATAAAAATATGATGTTGGAAGCAGCATCCGGATACTGAAGAAAGCTCACCATATAAATCTTGTGCATGAGAGAGTGGAGAAAGGACAAGATTAACCTACAGAAACAGAGATGGGTCTATGGGGCTGGGACTGATGGGGACTGTGGTAGCAATTACTCTAAGGAAGCACTTGAGAATTTTGGGGTGGTGAAAGTTGAAGGAGTCTTGGGCTGGAAGATGGCTGTGTCAGTAAAATGGCTTTGTCAGTAAAATGTTTTCCACCCAGCACCCATGTCAGGCATCAGGCCTGGTGGGAGGAAGGGGAGGTGAAGGTGAGAACAACTTAATCTGTTGGGTATGCTAGCCAGAGACCATAGCCTAAATGGGCAGCTCTAGGTCAATAGTAGACCCTGCTTCACAAAACAAGGTTGACAGCACCTAATTAATAACACCCGAGGTTGCCTTGGCTTCCAAACACATCCATATGAACACCAAAGTTAGTAATAATAATAACCAAGGGCTGAGGATATAGCTCAGTAGTAGAGCACTTACCAAGCACGTGTGAGGCCAGGATTTATTTTGTGCATCTGACATCACAGGATTTTGCTTTCACACATATGTACTACAAAGCAAATCGTTCTATACTCTAATACTTAAAATGCATCTGTGTAGAGAGACAGATGTGTACAAATCCATCTATCCTTGCCAAGGACCAGCTTCAACTCTGAGAGGGGTTCATGAGGGAAGGGGTGTTTGAGAACATCGAAAGGAATGACTCGGAGTCAAACCGTGGTTACTAGATGACAGCCTTGTAGTCTGCTTGAAATGGCTACCTGGGTCGCTTCTCTGTAGATAGCTCTTGGCTCTATAGTCTGTTCAAGACAGAGGTCTTTCCAGATAGCTCTTTCTGCTTGAGATCATTTCTGCTATCATTCTCTACAAGTTCATCTCATGCAGACCAAAAGCCCAGTCTTTTATTTACATATCAAGTCAGTCATCAGTCATCTATTCCAGGTTCCCTCTTGACCATCCCACACATCAGCATTCTAAGACCTTAGCCCATTGACTGTTAGGAAAAGGACAGCAAGTAGCATATATATATATATATATATAAAATTTTATATATATATATATATATATAATTTTATTTTTTCCAAGCTCTGCCTGCCATTGTAAGCACAAACAATAAACTTAGCTGGGTGGGATCCAGTCCTGAGATTACTATTCTGACTGTGCCTGTACCTAAATTCACTCTGTCCCACACTGGCCTTGAACTCAGAAATCTGCCTGCCTTTGTATCTTTCTGACAAATTGGCTCATTGTGCAGTTTTTCTGGGTCCACCAAGCTGCTCATAGACTTCATACTGCATCCCTATATTTTGCATAGTTGAGAAACTATATATGTTGGAATTCATGTTTTCAGAGTTCTTTCCCATAACCTTAAGGGCTGTCCTGAAGTTCTCACTTTTCACCATTTCCTGAGACATTAGACATGTCCTTACCTTCCTGGACTTGTGCTATCTCTGATTGTCAGGGAGTCATTAACTTTTGACAGAGAGGACATTCCCTGATAACCTTGGCAGGGAGAATATTTCCTGAAGGAGAAACATGAAGTTTGTATGTATTTATTAGTTTTATGCCCAGCAATTATCAACACTTGTGGAGGCCCATGCCCTGCCAACTCTGATCCAGGGGCAGGAAACCATGTCACGCCATCCCTCCACATGGCCAAGTAGGGCTCAGTACATCCTCAAAATGACCAGACATGAAATAAAGCCAATACTAAGAATAATTTTAAAAGAATAGTCATAGGATATCATCACAAAAGTAGTTGGTAGAATTTATGGTCAAATGACCTGGTAAAAATATTATCAGGACTCGAATAGAAATTTTAATAAAGAAGGAGATGAAAATGGCCAACTAGAATATACAAAATGTTCAACATCACTGATTAGGGAGATTCGAGTCAGAAGTGTAACAGGTGTCACCTCATACAGGTTAGGATGACTACTGTGGAAGTAAGACTCGGGGCCTTGTGGGGAAATTGCAGTTCCTTCACATGCTGCCTGGGGATCCATGGGAAACAGGATGCTACTTTCTCAAAAACTAAAAATAGAATGGCAGTGTGAGCCAGCAATAACCCCACTTCTGGTTATATATCCAAAATAACAAAAAAAGTCCCTGAAAAGATAGCCCGAGAACTGTGTTCATAGCAGTAATATTGCAGTAACCCAATAATGGAGGCCTTCCAAATGTCTATCAGTGAATAAATGGATTGCCAACATGGCCTGTGCATGTGGTAGAATACTAGTAAGCCTTTAAAAGAAATTCTGAGGCATTTTATGACATGGTAAAATCTGGAAGCCATTATCCTGAGAGAAATAAACCAATCACAATGATTAAACACTGCCTGACTCTATTCACGTAATACACCAGAGTAGGCAAACTCATGAGCACAAATAGTAATGGTGGATGCCAAGGATGGGGTATGGGAAGGACGAATAGTTGGTAAAGGTACAGAGACTTGGTTTTACAGGATGAAAAGGTTTTGAAGTTGGTGACATAATACATTTAATTTCAGAGGCAAATTTTTATAGGTATTTCAAAAATATTTCGAAAGTAATAAAATTGGAGTATACCTATGGAAGAAGAGAGGATGGTCTGGTTGTTAAATAGGAAATGCAAATAAACTTTACAGAATCATTTCAATAATGGTCATGAACTAGGCATAGTGGCACACACCTATAATCCTAGCACTTGAGAGGCAAAGGCAACAGGATTGACATAAGTTCAAGCCCATCCTTGTTTACAAAGTGAGTTCCAGGCCAGCCAGGGTGAATACCGGAAGACCCTATCAAATGTTCATGCACCCATGTGAACACACATACACACACACACACACACACACACACACGAACACACACACATGCACATATATATGTGCACACACACATCATACTTGTACACATGCACATATACGCATGCACACACATGCACCTATATATGTGAACACACATACATACATGTACACATGCACACATACACATGCACTCACACACACATACTCATATCATGACATCAAACCTAGAATGAAAACTTTCTGTGTGGAACACTCAGAGCATTTTAGCAGCTCCTTCAAGCCTAATAAAAGTTCTGCCTTGTCCTCTCTCCCCATAGAGTGTAAGCTGTACCCTTATGTGCCTGAGACTAGCTAGACACTCAAGCATGACTTTACTTTAACATTGACCTTCCAG
Seq C2 exon
GCTTTCAAGACACTGTTCCACAGAGCCATTGAGCAAGCTGACAAGGTGGAGGATACTCAGGAGCGCATCTGTGCCCTAATGGAGAGTGTCACCTATGCTACCTTCCTCCATGCCAGCCAAGCACTGTTTGAGAAAGACAAGCTCACATTTCTGTCCCAGATGGCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:75
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]