DreINT0009175 @ danRer10
Intron Retention
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19399422-19399787:-
Coord C1 exon
chr16:19399670-19399787
Coord A exon
chr16:19399542-19399669
Coord C2 exon
chr16:19399422-19399541
Length
128 bp
Sequences
Splice sites
5' ss Seq
GGAGTCAAT
5' ss Score
-14.03
3' ss Seq
TCTGTTTAATAGGGCTGAAGCTT
3' ss Score
-6.12
Exon sequences
Seq C1 exon
AAATTTTATTGAGGACAGTTTGGGACCCAAGTATGTGCACATCAGTCATATGGAGTTTGAAAAATGTTTTGAGGAGTGCAGTCCAACAACACCAGTGTTCTTCATCCTTTCTCCTGGA
Seq A exon
GTCAATCCGGTCAAAGATGTAGAAAAACTTGGTAGACAGAGAAGCACACTTAATACTAAAGCTATGTTTCTTTTTTTTCTTTTTTATTACAGTATTAACCCTACCATATCTGTTTAATAGGGCTGAAG
Seq C2 exon
CTTGGCTTTACCACAGACAGAGGGAACTTCCATAATGTGTCCTTAGGTCAAGGACAAGAAACTGTAGCTGAAATAGCGTTGGAGACCGCAGCTAAAAATGGACATTGGGTCATGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282:ENSDART00000138744:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTATTGAGGACAGTTTGGGACCC
R:
CTGCAGCATGACCCAATGTCC
Band lengths:
234-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]