HsaINT1011355 @ hg38
Intron Retention
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21867859-21868991:+
Coord C1 exon
chr7:21867859-21868007
Coord A exon
chr7:21868008-21868863
Coord C2 exon
chr7:21868864-21868991
Length
856 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CGTGGTGTATTCTCCCACAGGCA
3' ss Score
10.82
Exon sequences
Seq C1 exon
AAATTTTGTAGAGGAAAAACTGGGTGCGAAGTATGTGGAGAGGACCAGATTGGACTTAGTTAAAGCATTCGAAGAAAGCAGCCCAGCCACCCCCATATTCTTCATCCTGTCTCCGGGGGTAGATGCCCTTAAAGACCTGGAGATTCTTG
Seq A exon
GTGAGTGGCTGGGAGGCTCGCTGGCCCGCCCCTTCTCCCTCCCTCCCTTTCACCCCCACCCCTGCCCTTCTTTTCAGTTCACAGTGATCTTAGTTTCTTTTTTTTTTTTTTTTAATTTGTTGAAGATTGGGTGTATGGAAAATGTAAAGCTAATAACCCCATAGTCTGAAGAAATGTTGAAATGGAACATTCATGTGGCTGGCATAATGCAAGTTTCTTTTGTACTGTTTTCCACCTTTTGACTGTATGAGGGCCAGAGGGCAATTTTCCACATGCTCATGTAATCTTGTGCCCCCTGTGACTAAATAATGGTCATTAGAGCAAGTGTATTTGATTGCGCAAGGCACTGTCGCCTTTGTGTTCTGGATTACCATTCCCCACGGCCTGCACCAAGAATACCAGGTTAATATAGCTGTGACCTGACTGTGCTCAATTTAAATGCAGTCTCACAAGGTGAGAGGCTTGTGCATTTACCCAATGAACAGATCCATTCAAAAAAAATGATGTGATATCTACCACATGTTGCTCCTTTTTATGAGAGAAATGCTTTGCTACTCCTGCAAGAGTTTATAAAGCTCCATAACAATGCCTGCCATCTATCAAAATGTCAATAGCTTCATTATCATAAAACCAAAGGAACTGGCTTCCACGGCTTTTCTAATGCTTGCAATGAGGCAGCTGTGGAGAGCTCAAAATGCTGCTTGTGGATACAACAGAAGTTTCTTTGGGATTCTTCAGGAAAGTCACTCAGAAGATGGCTGCGGTGACCACAGATGTGCATTAGACCACAGAATTCCAGGCTCCTCTCACCCTCCTTCATAGACATTTCCTCTCACCGTGGTGTATTCTCCCACAG
Seq C2 exon
GCAAAAGACTTGGCTTTACAATTGACTCTGGAAAATTCCACAATGTGTCTTTAGGACAAGGTCAGGAGACGGTGGCAGAAGTGGCCCTGGAGAAAGCTTCCAAAGGAGGACACTGGGTCATCCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877:ENST00000409508:72
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGAGGAAAAACTGGGTGCG
R:
TTGGAGGATGACCCAGTGTCC
Band lengths:
271-1127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains