GgaINT0101089 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NTA2]
Coordinates
chr2:30670507-30671798:+
Coord C1 exon
chr2:30670507-30670650
Coord A exon
chr2:30670651-30671710
Coord C2 exon
chr2:30671711-30671798
Length
1060 bp
Sequences
Splice sites
5' ss Seq
GATCTAGGT
5' ss Score
-3.37
3' ss Seq
TGTCATTCATTTTCCCCCAATTA
3' ss Score
-0.29
Exon sequences
Seq C1 exon
GAATGTTGTGGATGCAGAGCATAGCTCAAGATATGTGGAAGGCAAAGGAATGGACTTAGTAAAGTCATACAAAGAAATCAGTCCAACCACTCCTTTGTTTTTCATTCCATCTCCAGGAGTGAACCCATTTGAAGACATGGAGAT
Seq A exon
CTAGGTAAGCTTCTTATTTGCTTCTGACGCAAGGATCATGCAGGCATGCTGAACTAAAGAAAAAAATGAGCTCCCAGCTGAAATGGACCATACAGAGCCATATATGTAAACATACCAATGTATTATATTTATATATATACTTGTATGTATGTACCTATATGTACATGAGTGTGTATGAGTGTATTTTTACTAAACAGATCAAAGCCCTCTACAGCAATCTGTCATTAAAATGGAGTACGCGTTACCATGGAAAAGTTGGCCAGGGTTTATTTTCAGCAGAAGATTCAAGTTCTGAATTTCTTCCACCCCCACCATATTCATGGTAAATTGGGTGGATGAAAAGTGTAAGGCCATAAGTGCAGCAATGTGAAGAAATGTTTAGACTGAGCATTCCTCTGCTTGGCATAATGCAGGTTTCCTTTGTACTGTTTTCTACCTTTTGACTAGATGAGGGCCAGAGGGCAATTTTCTCCATGCTCATGTAATCTTGTGCCCCCTGTGACTAAATAATGGTCATTATACAAACTATACTCAATTGTATAGAGTTCTGTCGCTTTATACTTAGGATTACTATTCCCTACAGACAATAGTGAGAATACCAGGTTAATACAGCTGTGACCTCACTGTGCTCAATTTAAACTCAGGCCTCACAAGGTGAGAGACTCGTGCATTTACCCACTGAACCAATCAGTTAAAAAACTGATGTGATATCTACCACATGTTGCTCCCTTTTTTATGAGGGAATTGCTCTGTACCCCCTGTAAGAGTTTCTAAAGCTCAGTAACAATGCTGAGCATCTATCAAAATGTCAAAAGGTTCATTATCTTAAAACCAAGGGAACAGATTTCTGCAGGCTTTTTCTAATACCAGCAATAAGGCCACTGTTGAGAGCTCGCAATTTTGCTTGTTGAAATTCTAAGGGTTTAGTGAAGTGCTTCAGAAGAAGTAATATGCATTGCACAAGTGATAGTGAAATTAATGGGGGGCATTATCATTCTTTTTCCTTTCTGCTCTGCTAATTTTCCTATCTCCTCCCCTTCTGTCATTCATTTTCCCCCAA
Seq C2 exon
TTATTTCTTTTACAGGCAAAAAGCTTCTACTATAAACTCTGGAAGATTTCATATCTCTTTAGAACAAAGTCAGAAGATGGTTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010906:ENSGALT00000017738:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(17.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGTTGTGGATGCAGAGCA
R:
TCCATAACCATCTTCTGACTTTGT
Band lengths:
231-1291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]