RnoINT0048706 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145816730-145817829:-
Coord C1 exon
chr6:145817681-145817829
Coord A exon
chr6:145816858-145817680
Coord C2 exon
chr6:145816730-145816857
Length
823 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CACCCCCAACTCTCCCACAGGCA
3' ss Score
9.09
Exon sequences
Seq C1 exon
AAATTTTGTAGAGGAGAAGCTAGGTACGAAGTACGTGGAGAGAACGAGATTGGATCTGGGTAAAGCATTTGGAGAAAGCAGCCCAGGCACCCCAGTGTTTTTCATCCTGTCCCCAGGCGTTGATGCCCTTAAAGACTTAGAGGTGCTTG
Seq A exon
GTGAGTAGCCAGGAGGCGCACCGGCCTCCCTTCCTTCCCTCCTGTCTTCAGCTCCTGCCCACCCTTTCTGTTCAGTACTCCCCGCACCCCCATTTGTGTGCAGAAAATGCAGAGCTAACAACACAGCAGTCTGGAGCATCTCTCCAACAGAACATTCATCCGGTTGGCACAATGCGGGGTTCTTTTGTACTGTTTTCCACCTTTTGACGCTATGAGGGCCAGAGGGCAATTTTCTCCATGCTCATGTAATCTTGTACCCCCTGCGACTAAATAATGGTCATTAGGGTGAGTCTATTCAATTGTATGAGGCACCAGTCACTCCGAGCTCTGGATTACTACCCCCACAGCCTGCTCCAGGAATACCAGGTTAATGTAGCTGTGACCTGCCTGCCTGGGCTCCATTTAAATGCAGCCTCACAAGGTGAGAGCCAGTACATTTACCCAAGGAGCCAATCCCTTCAAAAAAAAAAACGGATGCAATTTCTACCACATGTTGCTCCTTTCTCTGAGGGGAAAGAACTCCTACTCCTGCAGGAGTTTAGAAAGCTAGCTAACAATGCTGCCATCTATCAAAATGTCAAAAGCTTCATTATCATAAAACCAAAGGAGCTGACTTCCACTGGCTTTTCAAAATGCATGTAGGGAGGCATCTGGAGAAAGCTCAAAATAACGCCACTGGAAACAATAGGGAGGTCATTAGGATTCCGTAGGAAGGTAACCTATCAGGTGGCAGCTGTGGCCACAGACGTACATTAGACCTCAAAATTCCAGACTCCCCTCCCAAGTTAACATTTTCTCCCCTCCACCCCCAACTCTCCCACAG
Seq C2 exon
GCAAAAGGCTGGGATTTACGATTGACTCTGGAAAATTCCACAATGTGTCTCTAGGGCAAGGTCAGGAACTAGTGGCAGAAATGGCGCTGGAGAAAGCAGCCATTGGAGGACACTGGGTCTTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:79
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGAGGAGAAGCTAGGTACGA
R:
TGAAGGAAGACCCAGTGTCCT
Band lengths:
270-1093
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]