DreINT0009186 @ danRer10
Intron Retention
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19437518-19437868:-
Coord C1 exon
chr16:19437722-19437868
Coord A exon
chr16:19437632-19437721
Coord C2 exon
chr16:19437518-19437631
Length
90 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGAG
5' ss Score
1.51
3' ss Seq
GAATGTGTTTTCATTTTTAGGTG
3' ss Score
11.66
Exon sequences
Seq C1 exon
GTGGAGGATCTGACAGTAAAGCTGAACTCTCAGGAAGTGGAGCTGACAATGAAGAACCAGGCAGCTGAGGCTCTTATGGCCAGAATTGGCCTGCAGACAGAGAGAGTGAGCCAGAAGAGAGAAGACGCAGACCTGGAGGAGCAGAAG
Seq A exon
GTGGAGGAACCAAAGAGCTGTCTCTGTACTCATTGTCAAGGTGGTAATGTAGCATTTCCCCCTTGCTTATGAATGTGTTTTCATTTTTAG
Seq C2 exon
GTGGCTGCTATGCAAGCAGAGGTGTCCCGAAGACTAAAAGAATGTGAAAAGGATTTGGCTAAAGCTGAACCTGCTTTAGATGCAGCTACAGCTGCTCTCCAAACACTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282:ENSDART00000138744:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF127772=MT=FE(13.9=100)
A:
NA
C2:
PF127772=MT=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAATTGGCCTGCAGACAG
R:
TGTTTGGAGAGCAGCTGTAGC
Band lengths:
173-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]