RnoINT0048690 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145878234-145882783:-
Coord C1 exon
chr6:145882637-145882783
Coord A exon
chr6:145878348-145882636
Coord C2 exon
chr6:145878234-145878347
Length
4289 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
TAACTGCCCTCTCTGATCAGGTG
3' ss Score
10.02
Exon sequences
Seq C1 exon
GTGGGAAATCTGAAGGCCAGGCTGGCCTCTCAAGAAGCTGAGCTGCAGCTCAGAAACCAGGACGCCGAGGCCCTGATCACAAAGATCGGGCTTCAGACGGAGAAAGTGAGCCGGGAAAAGGCCATCGCAGATGCAGAGGAGCGAAAG
Seq A exon
GTCAGGCTCATTCCACCATTTAGAGTGCTGAGCTATATTTAGCACAAAATAAACCTTTGTAGGTGAACAATTTTGAACAACTTCCTCTCCAGGGAGCACGAAGTCTAAGGAATTATTATCGTTACACATGTAACAGCATTTCACACCATGATTACCACTTGACCTTTCTTTACATCATGCATTTCCCCAACCTTTTAGCTCTTTAATGATATGAAAGAACAATAAATACTGAGCTCATTCAAGCATATAATGGATGTGGATCTTGCACATCAGGCCTATTTGTAATACAGTAAAGGTCAGGGAGTCACCTCGGAGGTTTCTAAAGGTTTCCAGTTTTTAGGCAAATTGAACAACTCAATTGTTAACAAAGCCCATTCCGTCACTTTGCGAGATGGTTTTCAAGTTTTCCAATTTTAATGATACAACTAGCATTCACTCACTCTGAAGGCCTAAGCTAAATGTGTTTTTCTTGATGGGAACGAGCCCTGGCATTCTGTACGATGGTTTGCTGATGGAAACAATAGCCTTCCAGGTTCCCTGGGTGCTGTTTTCTTCAAATTTGAGTTTCTAGCAGCTCCAATACAAATAAAACTTCACAATCTTCACTAAGCAAAATAGAACATAGTTCTCGTGGACCTGGTTTCCTGAAAGATATAGAATAAGGAACATAAATACTCATTCATTAAAATTAATAAACACTTACCACCAATTGTTATTTGCAGTAAAAGATTACAATCAGGGCTATTTTATTAAAAACTGAAAATTGCTGTAATCTCATAACTGTGAACTGGTGGCTGTTATTTTGCATGTCAGTGTACCAGGAAATCTGGGTTTTTCTAGTGCCAAGTAGCTCTTACATAATCAAAAAGTTTAACCAAAGGTTTGGAAAACACATTTAAAAGCCTCCAAACAGGTAAAAAAATATGACCCAGCACTCTTGAAGCAAATAATAAACGCATTTGACTCAACCAATAAGTGTATCATACCTAATTTTGGTGAAGTATTTCCACCAAGATTCAGACATGTGCAGAATGTCTCTAAAAGTATATTACATACTTAAGCAATCAGGTTTCATAGGTGGTGTGATTACCAGAAATTAATCCCACCCACAGGACCTATTTAAGGTATCACACAGATATGTGATGGTCTAGTACTTATAATTACTAATAATTATTAGCTCATCACCATAGGTACCTCTTGGAAATCTTGAAATTCAACAGGATTTGAAAAGGTTTATTTCCCCATCTTTTCATGTAAATACCTAAGGTAAAATTACCAGCATAAAGGAAGAAAAACATTTTAACAAATTATAACACACCCGATAAGTTATTTCATGAGGTTTATTAGACATAAAAAGAAATAATGTTTTATATCCAGTATATACCAAGAGGTATAAATAATGTTTACGTTTTTCATTTTGTCATTAGAGCTTAATTTTATTGTATTAATTTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTGTCTGTGTGTATATGTGTGTCTGTGTGAATATCTGCATTTATTTCATTGCTTTGGTTTTGGGGTGATGGGCACTGTCCTGGGATCTTGGGAATGTTTGACTATCATGGACCTTGCAATGGGAAAGCAGTGTGTTGTTTTTACTGGACCAGACTGAAAAGCTTAAGCAATAAGCTATTTTTTCAAGTTCTGGAAGCTGAGATCAGGATCCAAGTATTGGCTGATTAGGTTCTCCTGAGGCTTCTCCTTGGTTTGCCAATGGCTGCCATTTCACTGGGTCCCATCTGAGCCTTTCCTTTCCTTTGTTAATTTTGATGTCTGGTGGCCTTTGACATATTGAAAAATCATCCTTCCCTAGGGATTACTAGAAAGATTGGAGTAGGGCTCATCTTAACTCTTTTTCACTTCTTTACCTCTGTGCAAGTCCTGTCTCCAAACGTAACCCCATGGTGGGATGCATGGCCAAAGGTGTTGACAGAAGAACTCTGGACGAGTTCAGTTCAACCCTCCCAACCCCACCCCTTTTAGACAGAGTTTCATGTGTTCCTAAGCTGCCTTGTCCCCACTCTACAGCTGAGAATGACCTTAAACTTCCAATCCTCCTGCTCACAACTGTGAAGCATCATACTTGGTTTATGCTGTGCTAAGGATCCAAGCCAGATTTCAGGAATGCTGGGCTAGCACTCTGTTAGCTAAGCTACATCCCCAGGTCAGCTTTTAACAGGAAATTCTGGAGAATCTGTAGCCAACATAGATTCTTATGAAAAATCTCAAGGAGCGGTTGATTAGTAGATAGCAGAAAATGTGTGGCGTACCTGGAGATGGGACTATCTCCAATTCCCTGCCGTAGTGTCATGGCAGAGAAAAAGAGGCGTCAGAGGTGGCACATGCAGCTGTTGCCCTTCTCCTAGTTGAGCCTTTCTGATCATTGCCTTGCAGTCGTTCCACAGAGGGAACTGCCTGCTGCAGCTTGGTGAGTCGCGAAGATCTGCAATCTCTCTAGTGTGTGTGTTGCAAAAGGTATTAGGAATGAAAAGTGAGCTCGCCAACATAGAACCCCTTCTTTGTTTGTGGGATTTTTTTCAAGCAATGCTACTCTGCGAGTAGCCTAGGAGTCTAAAGGGCAGTGGGTAAAAGGAAAGGTCCTCCCAGTTTCACTCGGCGCCAAAAAAGTTGATGAGACCAAAGAAAAATGATTTTACATGATGTCACTATAAATGTCGTAAGGGACACTGGTGAACGCATATCTTTATGTGATATGAATATACTCAAGATGCTAACTCCCTCGAACGCACGCGCTCTGACTGTGATAGTGTTCTCTAACGCAGTGTCAGTATCGTGTGCAGAACTCCAAAGCCCACTTTTGGCCCTGTTCTCAGGGTGTGCTTTTGAAGTTCTTAGTAAGCACGCAGAGTTTTCTTGTTTACGTTAGCAGTGGCTGTGTGTGTGTTAGCAGGAGATCACGTATCTACCCTGAACCAATTATGCTCATAAAAGGTAGAGTACACAGCAAAATAATGGTTAATCAGGAGAAGGCTAATTACTACTAATGAAGCTGCCGCAGACAACATAATTTGTTGTGAGCCGTGTTTAATTTGATGGTGTGGTTGAACCTGTTCATTCCAAACACATCTGAAGAAACGCACTTTTGTTCCAACTTCATATCCCACAATCACTGTCACCCTGAGAACTGTCCCACCAGGACTTGATCCTGGTGCCCAGTGCCACAGCTTGAAACTCAAACCCGCTGGGGATAAAAATTCACTCAGACTTGGCGCTGAAATTCTGTAGCATTCTACGAGGGGGAAGATAGAACTCCAGCCTGGAATACTGGGTGAGCTCCCCAGCACAGCCTCCCATAGGAGATAAGGTAGGTTATATAGGAAGGTTTATACAAAGCCCTGTCAAGAGGACAAGCAGGTAGGTGTCAGGGTATTTATTACCCAAGAAACACTTGGGCACATTAATGGCTTCTTACTAATCCTTCTTTTTTTTTTTTTTTTTTATAAATTCCTGTCTGTGGTTATATATGCAGGCCATGACCACAGAACAAAGGATCTTCTGTTTTGAACAAAAGGGCTTCACACACACACACACATGTGTGTTACCTTCATTTATATGTGCTCAAGTGAGTGTGTGTGTAGCAGTGTGAACATGCATGTGCGTTAAAGACCAAAGACCAACCTCATGTGTCAGATCTTAGGAATTAACCACCTCGGACTTTGAAACAAGGTCTCTCACTGGCTTCGAGCTCAGTGGTTCAACTAGCAGATAATCCACAGGAATTATGTTTTCTACTCCCATGGGGATGGATTATAAGCCCATACCCCCCCGGTGTGGGCTCTTCATGTATGTTCGAGGATCAATTTAGGGGGCATCGGTTCCCCGGTTAGCAGGCCCGTTTTTAATTGGAGCCATTTCCAAGTTTTTTGAGGGAAGGGCCACCAAGACTTGTGAGGGAAGNTTTTGACCAATTGGGGGGGAAACTAGCTTTTTAAGTCAGGCCAAGATTATTCTTTTAAGTAAAGAATTTCCAAGGTTAGGGTAAATTTAGGGGAAAAGTTGGGAACCGGAAAAAATGGCTGCTTACTCTCTTGTCTTGTCTTGTGTTTAATTATTAGTGGCATCTTACAAGCAAACGACGCTAAGCCCTTTTAGGAGCATTTCAGTATCGAGTGTTTCTGTTTGTGGGTTTATTATTATATGTTTACAGAGTGCCTCAGAGTGCCTCAGATCAGTCTGTGCTTTGTTGGAGATCTCTGAGGTGGTAATTGGGGGTGGGGATCTCTAACTGCCCTCTCTGATCAG
Seq C2 exon
GTGGCCGCCATTCAAACTGAAGCGTCCCAGAAGCAGAGGGAGTGCGAGGCTGACTTACTCAAGGCTGAGCCCGCCCTGGTCGCTGCTACAGCTGCACTCAATACACTCAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.158
Domain overlap (PFAM):
C1:
PF127772=MT=FE(13.9=100)
A:
NA
C2:
PF127772=MT=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]