DreINT0009215 @ danRer10
Intron Retention
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21203761-21204234:+
Coord C1 exon
chr7:21203761-21203978
Coord A exon
chr7:21203979-21204135
Coord C2 exon
chr7:21204136-21204234
Length
157 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
ATTTGTATATGTGTTTTAAGGTC
3' ss Score
8.68
Exon sequences
Seq C1 exon
GTCTTCTAGAGAAGCTGTCAGAAATGAACACTAAGTTAGAGGAGATTCAGAAGTCTCTGGACATGTACCTGGAGACCAAACGGCAGATCTTTCCTCGTTTTTACTTTCTGTCTAACGATGACCTGCTGGAGATCCTGGGCCAGTCCCGCAACCCAGAGGCTGTGCAGCCACACCTCAAGAAGTGCTTTGACAACATTAAAAGTCTCCGCATCAACAAG
Seq A exon
GTAAATAAAGGCTGCAGGGGATATGACTGAAATCTCAATGTGCAGTTGAGCAACTGTTTTTGTCATGTTATTGGTGTAAATTATTTTAAGTTTCAGAAATACACTGGAATAAGCCTGAATATTAGTTTAAATAATATATTTGTATATGTGTTTTAAG
Seq C2 exon
GTCGGGACTGGTAACAAGTCAGAGGCCAGTGGGATGTTCTCAGCTGATGGGGAGTTTGTTGACTTCACTCATCCTGTTCTTCTGGAGGGGCCAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352:ENSDART00000128014:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(17.3=100)
A:
NA
C2:
PF083938=DHC_N2=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACATGTACCTGGAGACCA
R:
GCCCCTCCAGAAGAACAGGAT
Band lengths:
252-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]