HsaINT0049610 @ hg19
Intron Retention
Gene
ENSG00000183914 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:2948]
Coordinates
chr17:7678077-7678660:+
Coord C1 exon
chr17:7678077-7678294
Coord A exon
chr17:7678295-7678558
Coord C2 exon
chr17:7678559-7678660
Length
264 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
GTAGCTTCTGCTTTCTGCAGGTT
3' ss Score
8.09
Exon sequences
Seq C1 exon
GCCTCCTGGACACATTGATAGAAATGAATACAATCCTGGAAGATATTCAGAAATCTCTGGATATGTATTTAGAGACCAAGCGACATATTTTCCCCCGCTTCTACTTCTTGTCCAATGATGACCTGCTGGAGATTCTGGGCCAGTCCCGAAACCCAGAGGCTGTGCAGCCACACCTCAAAAAATGCTTTGACAACATCAAGTTGCTGAGAATCCAGAAG
Seq A exon
GTCAGTAGAAGTGGCCACAGTGAGATGCTGGGTGGCGAAGGGAGGGTGTTGGGGTATGAAAAGCTTTGGAGGGGACCCTGCCCTCCCAAAAGGAGGGCCATGTTAATTAATGATTCTCAATTCTCAGGGGGATAGAACTTCTTAGAATTGGTAATATTGAGAGGAGGGGAGAGGAGCAGTAATTATCCTCAAAAGGCCCCAGGACTTCTAGGCGGACACCAAGGGTGGGCAGGCCAGGCTCTGAGTAGCTTCTGCTTTCTGCAG
Seq C2 exon
GTTGGAGGGCCCAGCAGCAAATGGGAAGCTGTGGGGATGTTCTCGGGCGACGGCGAGTACATTGACTTCCTCCACTCAGTATTTTTAGAAGGCCCTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183914-DNAH2:NM_020877:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(17.3=100)
A:
NA
C2:
PF083938=DHC_N2=FE(7.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCTGGACACATTGATAGA
R:
TGGAGGAAGTCAATGTACTCGC
Band lengths:
292-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)