GgaINT0019468 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2886561-2888234:+
Coord C1 exon
chr12:2886561-2886666
Coord A exon
chr12:2886667-2888054
Coord C2 exon
chr12:2888055-2888234
Length
1388 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
TGTTGTGCTTCCTTCATTAGCTA
3' ss Score
6.49
Exon sequences
Seq C1 exon
GTTCTACTTCCTTTCTGATGATGAGCTGCTGGAAATACTGTCCCAGACAAAAGACCCCACTGCTGTACAGCCTCACCTTCGGAAATGCTTTGAGAACATTGCACGG
Seq A exon
GTAAGCAAAGCAAAGCAAGCACTTGGAGGGTTGGCCCACCTCTGGGGAGCTGATGTCATGGGAACTTAGGGGCGTTCTGAGACCTGGGGGAGTTTTCATATTCTGCTGTATGGGAATGTATCTCCTGTAAACCTGTAACTGTCGGCACTGCAAGATGCAAACTCTGCCACCAGGAGAGCACGACAGGTTGGTTCCTTAAGGCAGCTTCTCTCTTCTGTGTGGGGTAAAAGACTTGAGCTGATTCTGCCCTTTTCTGAACAGCATTAAGAAAAGAGGGTGGGGTACATAAGACTCCCAGTGTGCAAAGCATAAAAACACATCTCCAGCATGCTGCATGGAAGCAGAACGGTTCTCCACACTTAACTGTGCCCTGGAGTTGAGATTCAAGCAACCTCACTTTAGACATTTCAGAGCCAGACGTGTGCCTGTGAACTGGACACATGTGATTACCTTTTAGTCAACAGGGATCTGCAAAAGACAGCTTGCTGGAAGGTTTCTTAGATGACCAACTAAGGAGGAGCGGACACTCCTCCTGGAAATACCTGTCTGTCTCACCATGGAGGCCGGGAGAAATAGAATAACAAAATGATTTGTGTTTGGATTTGTGTTGGATCTTTGCTCCTGCAGACGGTGACATCTTTCACTAGATCATCTTGTCCAGTAGCCTAATTGCTAAATAGCTCAGATGTAGCTCTTTACTCACAGATACCTGGTGAGGGTGGAATTCCCCACTTACAGACACCCTCAGGAGGGAGTAAACAAGCTTAAACTGAACCAAGTTCCTGCTTTCATCCTGATTTAGGAGCTGGGTGGGGTTAACCCTGCTATTTCCCTCTTTATTATTCCTAATTGACTTCAGACTCCAGGGCTAGACACAGTTCACACCACTGCAATGCTCAGACATGGAAACCAATCTCCTAGTCATTAGCTTGGGAAAATAGAAAGGAAATTGAACTGGAAACCTGATGCAAGGCCATTGGAATAAATAAGGGGGCTGCCAGTGATTTGCTGGGGCAGCAGAGAAACTGTTAAGATTTTACTTTTAAAACCAGGCACTCTGACCTCAAGGAAAACAACCTGTATCTACAGAATTGAACAAGAACCAAGAGTTTGAATGCCAGACAGGCACTGATAAATGTTCATCCCACCTACAATTTGATTTGCTTCTCCCAAACAAAACCCGTGATGTGAATCTCTTATTTTTGTATGATCATCCTCCATTTTTTGAGGAGGTTGTCTTGCCAATCTGTGACACACTTTGTTGTTATCAGCCAAGTTGGGCACCAAATGTGTAGTGAGCATCCTATGCTATATCCTGACTGTCATTCAGTGGCAGGAAGGCAGGGAGATCTTGTCATTCATGTCTCCTGTTGTGCTTCCTTCATTAG
Seq C2 exon
CTACAGTTCCAGGAGGATCTGCAGATCACACACATGTATTCTTCTGAAGGAGAAGAGGTGAAGCTGTCTGCTGCCATTTATCCCACTGACGAGGTGGAGGACTGGCTGCTGGAAGTTGAGAAATCCATGAAGGCCAGCGTACGGGACAACATAGAAAGATCAGTTGGTGTCTACCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(8.5=100)
A:
NA
C2:
PF083938=DHC_N2=PD(14.1=96.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACTTCCTTTCTGATGATGAGCTG
R:
GGTAGACACCAACTGATCTTTCT
Band lengths:
279-1667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]