RnoINT0048577 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7380077-7380799:-
Coord C1 exon
chr16:7380694-7380799
Coord A exon
chr16:7380257-7380693
Coord C2 exon
chr16:7380077-7380256
Length
437 bp
Sequences
Splice sites
5' ss Seq
CGGGTGTGT
5' ss Score
5.31
3' ss Seq
CCCACCTCTGTCGCCCATAGCTG
3' ss Score
9.62
Exon sequences
Seq C1 exon
ATTCTACTTCCTGTCAGATGATGAACTACTGGAGATCCTGTCACAGACAAAGGACCCCACAGCCGTGCAGCCCCACCTGCGCAAGTGCTTCGAGAACATTGCCCGG
Seq A exon
GTGTGTGGCTAGGCCAGGGCACTCTCCAGAGGAGACTGTTCTCCTCCCATGGCAAGCCCTCTTAGAGATGAGGCAGCAAGACAGACCCCGATCCTCAGAGATATGCCTGGGGCTGGTGGGAAGAAGGTTAGGTAAAGAACCCATTCCTCCTCTTCGGCCAGGGTCCTAACTCAGCCAGAAGCTCCTGTCCTCCCAAATACTGAGATCTGCGAAGGGTGAAAACAGAGGGCAAGTTTAGACTCATTTCCCAAGGGCTTAAACACACCCTGACAGATTGCTGTCAGGGAAGGCCCCCATGAAGGCAAACCCTGGGGGCGCGCCCCAGCACAGAGCTAGCTCCTCTAAGGGGCAAGAGTCTGGCCAGGTCAGACTGGGCTAAGGGCTGGCCCTCTGGTACACCAGGGTAACTCACTTCTACCCACCTCTGTCGCCCATAG
Seq C2 exon
CTGCTGTTCCAGGAGGATTTGGAGATCACACACATGTATTCGGCAGAGGGGGAAGAGGTGAAGCTGTCCTTCTCCATCTACCCCTCCAGCAATGTGGAGGACTGGCTGCTGGAGGTGGAGCGTAGCATGAAGGCCAGTGTGCACGACATCATCGAGATGGCCATCAAGGCCTACCCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(8.5=100)
A:
NA
C2:
PF083938=DHC_N2=PD(14.1=96.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTACTTCCTGTCAGATGATGAAC
R:
TGTAGGGTAGGCCTTGATGG
Band lengths:
286-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]