DreINT0057972 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34437962-34438390:-
Coord C1 exon
chr11:34438285-34438390
Coord A exon
chr11:34438142-34438284
Coord C2 exon
chr11:34437962-34438141
Length
143 bp
Sequences
Splice sites
5' ss Seq
CGGGTACGT
5' ss Score
9.5
3' ss Seq
TTCTGTTGTTCTATATACAGCTC
3' ss Score
7.8
Exon sequences
Seq C1 exon
ATTTTACTTTTTATCAGATGATGAGTTGCTGGAGATTTTATCTCAGACTAAAGATCCAACATCAGTGCAGCCACATCTCCGCAAATGTTTTGAGAACATTGCCCGG
Seq A exon
GTACGTCCTCTTTCATATCCATATGTTTACCATATTAGAAATAAAAATAATTTGCACGCCAGAAAATATCAAAAGGATTTTGGCTTATGTCAAATTTCAATTATAGCAACGAATAATAATGGGTTCTGTTGTTCTATATACAG
Seq C2 exon
CTCCACTTTCAGTCAGATCTACTGATCACACGCATGTACTCTTCTGAGGGAGAGGAAGTTCATTTATCCGTTCCTGTCTCTCCTACTGGCAATGTGGAGCACTGGTTACGGGAAGTGGAGAATTCAATGAAAGCCAGTGTAAGAGACAACATCAGTCGCTCTTTGCAGGCTTATGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(8.5=100)
A:
NA
C2:
PF083938=DHC_N2=PD(14.4=96.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGATGAGTTGCTGGAGA
R:
GCAAAGAGCGACTGATGTTGT
Band lengths:
258-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]