RnoINT0048881 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56088411-56089137:-
Coord C1 exon
chr10:56088920-56089137
Coord A exon
chr10:56088513-56088919
Coord C2 exon
chr10:56088411-56088512
Length
407 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
CTAACTTATCTCTTCTGCAGGTC
3' ss Score
11.08
Exon sequences
Seq C1 exon
GCCTCCTGGAGACACTGATAGAAATGAACACAATCCTGGAGGACATCCAGAAGTCTCTGGACATGTACTTAGAGACCAAGCGCCATATGTTTCCCCGCTTCTACTTCTTGTCCAATGATGACCTGCTGGAGATTCTGGGCCAGTCCCGTAACCCAGAGGCTGTGCAGCCACACCTCAAAAAGTGCTTTGACAACATCAAACTTCTGAAAATCCAAAAG
Seq A exon
GTCAGCAGAGGTGGCAGTGATGGGAAGGCAGGTGGGAAGGAATGGCTACCTCATGGTATTTGAGGCCTTGGAGGGGACCATACTCTGCCAGTAGGAGAGTAGCACTTGTTAATGACTGTAGAACCTCACATAGAAGAAATTACCTTTAAAGGGCTTGAATATAGGGTCAGTGGTTAAGAGCACTGACTACTCTTGCAGAGGTCCTGAGTTCAATTTCCAGCAACCATATAGTGGCTCACAACCATCTGTAATGGGATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCAGCAGTGTACTCATATACATAAAATAAATAAATTTTAGAAAGAGTGGGGGTTGTTAAATATTTATAGAAGGTTCCAGAGAGTGAGACTAAGGCATGGCTAACTTATCTCTTCTGCAG
Seq C2 exon
GTCGGGGGCTCCAGCAGCAAATGGGAAGCAGTAGGAATGTTCTCAGGTGACGGTGAATACATTGATTTCCTCCACCCAGTACTTCTAGAAGGAGCTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(17.3=100)
A:
NA
C2:
PF083938=DHC_N2=FE(7.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCTGGAGACACTGATAGA
R:
CTCCACAGCTCCTTCTAGAAGT
Band lengths:
320-727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]