DreINT0009257 @ danRer10
Intron Retention
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21305508-21309483:+
Coord C1 exon
chr7:21305508-21305658
Coord A exon
chr7:21305659-21309334
Coord C2 exon
chr7:21309335-21309483
Length
3676 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TGATTTTTTTTGTTTTGCAGGTG
3' ss Score
12.2
Exon sequences
Seq C1 exon
GGCTTGAAAGTAATAGATCTGCAGATGCCAGATTTTTTGCGGATCCTGGAGAATGCGGTGCAGTTTGGTTCTCCAGTGCTCTTGCAAAATGTACAAGAGGAACTAGATCCTTCACTGGCCCCCATACTCAACAAGTCGCTTACAAGAGTTG
Seq A exon
GTAAGTCACATACACACATCGGTTTTGCTATCCTGGGGTGCGTTTCCCAAAACCATCGTTAGCCAACTAAGGTCGCAAGTTCTGTCATTACAAACTTAGTTTGTTGATTTGCCGTTTCCCAAATCAGTCGCTCCAACAAACATTTGCAAACTCCTTCGCAAACTTGAGCTTTCGCAACTACACCTCTGGAGCTATTCCTACTTATGGCCCGTTTTACACGGAGTGGTACGATACGGTTCGGTATGGTACGCTTTTATAGCCGTTTCCACTGTTCAAAAGGCATACCGAACTGAACCGTATCATACCACTTTTTCAGCACCCTTTCGAAAGGGTACCAAACTAGAGAAAGGGCGCCAAAAGGCGGAGCTTTATCATCATCTTTAGGACTAATATAAACTGCCAATGATGGAATGACTCTCTAACAGAGGCTGCAAGTGCTGCTGAAGATTACAGACACAGATGAGAGGTTTTCCCTGGAGGCTATATTTTGTGTTGTTTTGAACCTAATTAAGGATGAAAGTTATGCTGTGTGTAGTTTTTATAGTTGGTAACATATCAGAGACTGTAAAGGCTGTATGTATTCGTATATGTTAATTTATTTAATACAATTACAGACGTTACAGTAGGCTATTTCGCTCTGTCATTGATCTGCAGTTCTAATCAAATCTTGTTCATAGAAAAGTTATAATAAACATTTATACTCAATTATTTATGTGTGTAAAGCGTCTGTTTTGTGAAAAGTGCTTTTTATATGATATGTGAGCGACCCGTACAGCTTTATTGTTGGCATTTCCTCGAGCGAGATTGATGCGACAGAACTTTCTGTCATACACCACGCCCACCAAAAATGGTACCATTGCTAATGGAAACGCAAGCCTGATAAAGGTGACCCGTACCGACCCAAACCGTACCATACTTTTCCAGTCTGTGAAAACGAGCCATTATCCCCCCTATGGCCTGTACATTTAGAACAATCTAACATTCAAAGTTGGAATTATTAAAAATAAAAAAGCATTACATTGCTTTCAAAGTATTTTTACAGTTCAGTTTTAGCGATCTTCATTTTTACAATTGTGCTCCCTTTGCAGTGCACTTTGAAAATCTTGATGTCATTTTGAACAGCCTCATGGCGAAAGCTATAGGTGACCTATTATTTAAAATCGGAATTTATGTTTCGTCTCCAAAGCTTGTGAAAACAAAGATCATACATTAATTATTTTAATTTATAGTAGGTTATAATATAATTAAGTTTATTATAAAGTATAATTTTTTCATTTCTAATACTTACTAAATATTAAATTTCATTTATTGATAAACCGTCTCATTATTTATTTATTTATATGATTTATATATGATATAAAAATACATGTTAGCTTTTGTAAGTGATTTTATGTTTTAGAATAGAATGTCATATTCTTAATAGTATTTTTAAAGCAAGCATAGGCCCTATGTGCCATTTACATGTATTTCTGTTAATATGGAAAGAGAGTGCATGTATTTACCAAATCTATTATTGGTTTTTATTTTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGCGTGCGTGCGTACGTGCGTGCGTGCGTGACAATATACTTTGCACAAAGAAATGATGGTTTTCTTCTCTAACGAAGTAGTTTCTTAGAGCGTCATTATGGGCGTTTTGGTTCAAGCGACTGATCTGCGACAGAGAAACTATGCGTTTTGGGAAACACTCATCACTAAATCGTTCTTTTCCCAAACGATGCATCGTACTATGATAGTTCAGCCGCGAGTTACATCGTTGTTTGGGAAACGCACACATTTGTTATCCACTATGGTGGGGACCTACCATAGACATAATAATTTGTATTTTCAAACTGTGTTTTTTACTCCCTACTCACAGGAAACAATCTACATTTTTAAAATAGCTCATTCTGTAAGATCTGTAAGCTTGTGTACTTTATGAAGTCCCCGTTAGTCTGTGTGCATTCCGATTCCACAGAAGTCCCCACAGGGATATAAAACATGTTTACACACACACAAAATAATGTGGTTTACATGCATATTGATCTAAACATTTTTTTACTGTACAAACTGTATATTCTATTTGGTTTTGCAAGGTCAATATGCACATTTTCGTCTTCATAAACTAAATATTGAATTACACACACACAACACAACATTGACTGATAATAGTGCTTGGAGAAAAAAAGAACAGTCTACTGTAGATACAGAATGTGTTTATGTTTGTGTCTGTAAGTGGATTATTAGATGTTATAGCTGTCTAATTTGTAGGTAGAGTTATAAATGAAGTATATTAAATGCTGGGCTGTCAATTTAATGCGTTAATTTAATTAATTAGTTACAAGAGCTAGTACTTAATTCCAGAATGAATGAGCAACTTCAGTGAATCGATGAATTAATTACTCACTCATTAGACATTTACTACCACATAATTGTCATGTTAAAAATGGTTTGGAGCTGCAATACATGGTCATACTATGCCATGTCATAAAATAAATAAATAAATGCAGTACAATGCAGGATGGATCCATCCTTTAATATTGGTGACGCCAAATTCTGACCCTACCATCTGAATGTCGCAGCAGAAATCGAGACTCATGAGACAACATTTTTCCAATGTTCTATTGTCCAATTTTGGTGAGCTTGTGCAAATTGTAGCCTTAGTTTTTTGTTCTTAGCTGACAGGAGTGGCACCCGGTGTGGTCTTCTGCTGTTGTAGCCTATCTGTCTCGAGACTGGCCGTGTTGTACATTCAGAGATGCTCTTCTGCATACCTCAGTTGTAAGGAGTGGTTAATTGAGTTACTGTTGCCTTTCTAACAGCTTGAACTAGTCTGGCCATTCTCCTCTGGCATCAACAAGTCATTTGTGCTCACAGAACTGCCGCTCACTGGATATTTTCTCTTTTTCTGATTATTCTCTGTAAACCCTAGAGATAGTTTGTGCGTGAAAATCTTACTAGATCAGCAGTTTCTGAATTACTCAGTCCAGCCCGTCTGCCACCAAAAACCATGCCACGTTCAAAGTCACTTAAAACACATTTCTTCCCTATTCTGATGCTCAGTTTGAACTGCAGCAGATCGTCTTGACCATGTCTGCATGCCTAAATGCATTGAGTTGCTGCCATGTGATTGGCTGATTAGAAATTTTGCTTTAATGAGCAGTTGGACAGGTGTACCTAATAAAGTGGCCGGTGAGTTTATATGAATAAAAATAACAGAAGAAAAATGTTCAGTCAGTGACTTGAAGATGTGGCCCAACAGGGTTGTAGATTTAAATTGTAGGTGATCTAAGAAATGGGCAGCACAGTGGCTCAGTGGTTAGCACTGTCACTGTTCAGTTTTTGTTCTTCCTGTGTTGGCGTGGGTTTCTTCCAGGTGCTCCAGTTTCCCCCACAGTCCAAATACATGCACTATAGGTGAATTGGGTAAACTAAATTTGTCCTAGTGTATGAGTGCGTGTGTATGTGAACTTGAGTGTATTTGTTTCCCAGTACTGAGTTGCTGCCAAAAGGGCATCTACTCAGTAGAACATATGCTAGAATAGTTGGTGGTTCATTCCGCTGTGGTGACCCCTAATAAAAAGGGAACTAAGCGAAAGGAAAATAAATGGATGAATGCTCTAAGAAATAATGTTTATTTGATTTTTTTTGTTTTGCAG
Seq C2 exon
GTGGCCGTTTCTTGTTAAAGCTGGGAGACAAAGAAATAGAATACAGCCCTGAATTTCGTTTTTACATGACCACTAAACTGTCCAATCCACATTACACTCCTGAGATCTCTTCTAAAACCACCATCGTCAACTTTGCTGTTAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352:ENSDART00000128014:69
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(21.6=100)
A:
NA
C2:
PF127812=AAA_9=FE(21.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]