MmuINT0050870 @ mm9
Intron Retention
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69249640-69250136:-
Coord C1 exon
chr11:69249986-69250136
Coord A exon
chr11:69249789-69249985
Coord C2 exon
chr11:69249640-69249788
Length
197 bp
Sequences
Splice sites
5' ss Seq
TTGGTCAGA
5' ss Score
2
3' ss Seq
TGACCCTCCCGCTGACGCAGGTG
3' ss Score
7.38
Exon sequences
Seq C1 exon
GGCCTTAAAATCATCGACCTGCAGATGCATGACTACCTTCGAGTTCTAGAACATGCCATCCAGTTTGGATTTCCAGTGCTACTCCAGAATGTGCAGGAGTATCTGGACCCCACGCTCAACCCAGTGCTCAACAAATCTGTAGCTCGAATTG
Seq A exon
GTCAGAGCCTAGGCTTATTGTGGGCAGGTCCTAGAGACACTAGGGTGGGAAGTGGGGGCTCTTTCGGGCTGCATCCCATGAATTAGGCGTCAGTGAAGCAGGCTGAGTCACATCTCGGGCCTAGGTATAAGAAGGGGGGTGGGGCAGCCTTACTGGATCACAGAAGACTCTCGTCCTTGACCCTCCCGCTGACGCAG
Seq C2 exon
GTGGTCGGATGCTGATTCGAATTGGTGACAAGGAGGTGGAATACAATCCCAATTTCCGTTTCTACCTCACCACCAAGCTCTCCAATCCCCACTATAATCCAGAGACTTCGGCTAAGACCACCATTGTCAACTTCGCTGTAAAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-Dnahc2:NM_001081330:68
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(21.6=100)
A:
NA
C2:
PF127812=AAA_9=FE(21.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGCATGACTACCTTCGA
R:
TGGTGGTCTTAGCCGAAGTCT
Band lengths:
254-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: