RnoINT0048924 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56044083-56044569:-
Coord C1 exon
chr10:56044419-56044569
Coord A exon
chr10:56044232-56044418
Coord C2 exon
chr10:56044083-56044231
Length
187 bp
Sequences
Splice sites
5' ss Seq
TTGGTCAGA
5' ss Score
2
3' ss Seq
TGACCCTCCCGTGGACGCAGGTG
3' ss Score
7.32
Exon sequences
Seq C1 exon
GGCCTTAAGATCATCGACCTGCAGATGCACGATTACCTTCGAGTTCTAGAACATGCTATCCAGTTTGGATTTCCAGTGCTACTCCAGAATGTGCAAGAGTATCTGGACCCTTCGCTCAACCCAGTGCTCAACAAATCTGTAGCTCGAATTG
Seq A exon
GTCAGAGCCTAGGCTGGTCAGTAGGGTGGAAAGTGGGGGCTCTTTCGGGCCGCACCTCATGAATTAGGCCTCAGTGGAGCTTTTAGGACAGGCTGAGTCACTGGCCTCGATGTAAGATGGGAGTGGGGCAGCCTTACTGAATCATATGACCCTTGACCCTTGACCCTTGACCCTCCCGTGGACGCAG
Seq C2 exon
GTGGTCGGATGCTGATGCGCATTGCTGACAAGGAGGTGGAATACAATCCCAATTTCCGTTTCTACCTCACCACCAAGCTCTCCAACCCCCACTACAGTCCAGAGACCTCGGCTAAGACCACCATTGTCAACTTCGCTGTAAAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:70
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(21.6=100)
A:
NA
C2:
PF127812=AAA_9=FE(21.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCATCGACCTGCAGATGC
R:
TCTGGACTGTAGTGGGGGTTG
Band lengths:
247-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]