RnoEX0028522 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56044083-56044767:-
Coord C1 exon
chr10:56044701-56044767
Coord A exon
chr10:56044419-56044569
Coord C2 exon
chr10:56044083-56044231
Length
151 bp
Sequences
Splice sites
3' ss Seq
TCCATCCCCTTGCTCTCTAGGGC
3' ss Score
10.48
5' ss Seq
TTGGTCAGA
5' ss Score
2
Exon sequences
Seq C1 exon
GTGGGCCCTCATGATCGATCCTCAGGCACAAGCCCTCAAGTGGATTAAGAACATGGAAGGAAACCAG
Seq A exon
GGCCTTAAGATCATCGACCTGCAGATGCACGATTACCTTCGAGTTCTAGAACATGCTATCCAGTTTGGATTTCCAGTGCTACTCCAGAATGTGCAAGAGTATCTGGACCCTTCGCTCAACCCAGTGCTCAACAAATCTGTAGCTCGAATTG
Seq C2 exon
GTGGTCGGATGCTGATGCGCATTGCTGACAAGGAGGTGGAATACAATCCCAATTTCCGTTTCTACCTCACCACCAAGCTCTCCAACCCCCACTACAGTCCAGAGACCTCGGCTAAGACCACCATTGTCAACTTCGCTGTAAAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(9.5=100)
A:
PF127812=AAA_9=FE(21.6=100)
C2:
PF127812=AAA_9=FE(21.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCTCATGATCGATCCTCA
R:
TGTTCCTTTACAGCGAAGTTGACA
Band lengths:
212-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]