BtaEX6086786 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28116082-28116831:+
Coord C1 exon
chr19:28116082-28116148
Coord A exon
chr19:28116291-28116441
Coord C2 exon
chr19:28116683-28116831
Length
151 bp
Sequences
Splice sites
3' ss Seq
TAGCTTCCCTTGCTTTCCAGGGC
3' ss Score
8.63
5' ss Seq
TTGGTCAGG
5' ss Score
1.56
Exon sequences
Seq C1 exon
GTGGGCACTGATGATCGATCCGCAGGCCCAGGCTCTGAAATGGATCAAGAACATGGAAGGAAATCAG
Seq A exon
GGCCTACAGATCATCGACCTGCAGATGAACGATTATCTCCGAATCCTAGAAAACGCCATCCAGTTTGGATATCCAGTTCTGCTCCAGAATGTGCAGGAATATCTGGATCCCACACTCAACCCTGTGCTCAACAAATCTGTAGCTCGAATTG
Seq C2 exon
GTGGTCGGTTACTGATGCGCATTGGAGATAAGGAGGTGGAATACAATCCCAACTTCCGTTTCTACATCACCACCAAGCTCTCCAACCCCCACTACAGCCCAGAGACCTCAGCCAAGACCACCATTGTCAACTTCGCTGTCAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605-'71-70,'71-69,72-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(9.5=100)
A:
PF127812=AAA_9=FE(21.6=100)
C2:
PF127812=AAA_9=FE(21.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCACTGATGATCGATCC
R:
TCTTTGACAGCGAAGTTGACA
Band lengths:
212-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]