DreEX6004706 @ danRer10
Exon Skipping
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21303255-21309483:+
Coord C1 exon
chr7:21303255-21303321
Coord A exon
chr7:21305508-21305658
Coord C2 exon
chr7:21309335-21309483
Length
151 bp
Sequences
Splice sites
3' ss Seq
ATGTTGTGTGTTTTTCTCAGGGC
3' ss Score
10.49
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATGGCCACTAATGGTGGATCCTCAAGGACAAGCGCTAAAGTGGATTAAGAACATGGAGTTCAAACAA
Seq A exon
GGCTTGAAAGTAATAGATCTGCAGATGCCAGATTTTTTGCGGATCCTGGAGAATGCGGTGCAGTTTGGTTCTCCAGTGCTCTTGCAAAATGTACAAGAGGAACTAGATCCTTCACTGGCCCCCATACTCAACAAGTCGCTTACAAGAGTTG
Seq C2 exon
GTGGCCGTTTCTTGTTAAAGCTGGGAGACAAAGAAATAGAATACAGCCCTGAATTTCGTTTTTACATGACCACTAAACTGTCCAATCCACATTACACTCCTGAGATCTCTTCTAAAACCACCATCGTCAACTTTGCTGTTAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352-'70-75,'70-73,71-75=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(9.5=100)
A:
PF127812=AAA_9=FE(21.6=100)
C2:
PF127812=AAA_9=FE(21.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTAATGGTGGATCCTCAAGGAC
R:
TGTTCTTTAACAGCAAAGTTGACGA
Band lengths:
210-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]