MmuEX0015000 @ mm9
Exon Skipping
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69249640-69250349:-
Coord C1 exon
chr11:69250283-69250349
Coord A exon
chr11:69249986-69250136
Coord C2 exon
chr11:69249640-69249788
Length
151 bp
Sequences
Splice sites
3' ss Seq
ATCTATCCCTTGCTCTCTAGGGC
3' ss Score
9.33
5' ss Seq
TTGGTCAGA
5' ss Score
2
Exon sequences
Seq C1 exon
GTGGGCCCTCATGATCGATCCTCAGGGCCAAGCCCTCAAGTGGATTAAGAACATGGAAGGAAACCAG
Seq A exon
GGCCTTAAAATCATCGACCTGCAGATGCATGACTACCTTCGAGTTCTAGAACATGCCATCCAGTTTGGATTTCCAGTGCTACTCCAGAATGTGCAGGAGTATCTGGACCCCACGCTCAACCCAGTGCTCAACAAATCTGTAGCTCGAATTG
Seq C2 exon
GTGGTCGGATGCTGATTCGAATTGGTGACAAGGAGGTGGAATACAATCCCAATTTCCGTTTCTACCTCACCACCAAGCTCTCCAATCCCCACTATAATCCAGAGACTTCGGCTAAGACCACCATTGTCAACTTCGCTGTAAAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237_MULTIEX1-7/23=6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(9.5=100)
A:
PF127812=AAA_9=FE(21.6=100)
C2:
PF127812=AAA_9=FE(21.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCTCATGATCGATCCTCA
R:
TGCTCCTTTACAGCGAAGTTGA
Band lengths:
212-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: