GgaEX6009927 @ galGal3
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2920921-2922513:+
Coord C1 exon
chr12:2920921-2921040
Coord A exon
chr12:2922032-2922181
Coord C2 exon
chr12:2922353-2922513
Length
150 bp
Sequences
Splice sites
3' ss Seq
ATTCCCCTTTTGCCTTTCAGGAG
3' ss Score
11.31
5' ss Seq
CAGGTCCTT
5' ss Score
1.79
Exon sequences
Seq C1 exon
ATTGCTGGTTTACCAAACGACACGCTGTCTGTGGAGAACGGGGTGATAACACGGTTCTCCCAGCGCTGGACTCACTGCATAGACCCTCAAAGACAAGCAAACAAGTGGATCAAGAACCTG
Seq A exon
GAGAAGGTGAACGGCCTGGAGGTGGCCAAGCTGAGCGACCGGGACTTCCTCTGCAGTCTGGAAAAAGCCATTACTTATGGGAAGCCCTTCCTGCTGGAGAACGTTGGCGAGGAGCTGGACCCAGCCCTCGAACCCATCCTGCTCAAACAG
Seq C2 exon
ACCTACAAACAGCAAGGCAGAACGGTGCTGAAGCTGGGGGATGCGGTGATCCCTTACCACGAGGATTTCAAGCTGTACATCACCACCAACCTGTCCAACCCCCATTACAGCCCCGAGGTTTCCACAAAACTCACCCTCATCAACTTCACCATCTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-'66-68,'66-67,67-68=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(16.7=100)
A:
PF127812=AAA_9=FE(21.0=100)
C2:
PF127812=AAA_9=FE(22.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTACCAAACGACACGCT
R:
TTTTGTGGAAACCTCGGGGC
Band lengths:
244-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]