RnoEX6054800 @ rn6
Exon Skipping
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7353060-7353681:-
Coord C1 exon
chr16:7353562-7353681
Coord A exon
chr16:7353315-7353464
Coord C2 exon
chr16:7353060-7353220
Length
150 bp
Sequences
Splice sites
3' ss Seq
AACCCCGCCTTCCCCTGCAGGAG
3' ss Score
10.72
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATTGCTGGCCTCCCCAATGACACTCTGTCAGTGGAGAATGGGGTCATCAATCAATTCTCCCAGCGCTGGACCCACTTCATTGACCCTCAGGGTCAGGCTAACAAATGGATCAAGAACATG
Seq A exon
GAGAAGGAGAGTGGGCTAGATGTGTTCAAGCTGAGTGACCGCGACTTCCTGCGCAGCATGGAAAACGCTATCCGCTTTGGCAAGCCTTGCCTTCTGGAAAATGTGGGTGAGGAGCTGGATCCCGCACTGGAGCCCGTGTTGCTTAAGCAG
Seq C2 exon
ACGTACAAGCAGCAAGGGAACACAGTCCTGAAGTTGGGAGACACAGTGATCCCCTACCATGAGGACTTCAGGATGTACATTACCACCAAGCTGCCCAACCCTCACTATTCACCAGAGGTCTCCACCAAACTCACCCTCATCAACTTTACACTGTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914-'80-80,'80-79,81-80=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(17.0=100)
A:
PF127812=AAA_9=FE(21.3=100)
C2:
PF127812=AAA_9=FE(23.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCCCAATGACACTCTGT
R:
AGTTTGGTGGAGACCTCTGGT
Band lengths:
244-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]