BtaEX6094939 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49050204-49050848:-
Coord C1 exon
chr22:49050729-49050848
Coord A exon
chr22:49050454-49050603
Coord C2 exon
chr22:49050204-49050364
Length
150 bp
Sequences
Splice sites
3' ss Seq
CCTCCACTCCGTGCCCCCAGGAG
3' ss Score
10.27
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
ATCGCTGGCCTCCCCAACGACACCCTGTCAGTGGAGAATGGGGTCATCAACCAGTTCTCCCAGCGCTGGACCCACTTCATTGACCCTCAGGGCCAGGCCAACAAATGGATCAAGAACATG
Seq A exon
GAGAAGGACAACGGGCTGGATGTGTTCAAGCTGAGCGACCGCGACTTCCTGCGCAGCATGGAGAATGCCATCCGCTTTGGCAAGCCCTGCCTCCTGGAGAATGTGGGCGAGGAGCTGGATCCCGCCCTGGAGCCCGTGCTGCTCAAGCAG
Seq C2 exon
ACCTACAAGCAGCAGGGGAACACGGTGCTGAAGCTGGGGGACACGGTGATCCCCTACCACGAGGACTTCAAGATGTACATCACCACCAAGCTGCCCAACCCCCACTACACACCCGAGATCTCCACCAGACTCACCCTCATCAACTTCACCCTGTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794-'66-69,'66-68,67-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(17.0=100)
A:
PF127812=AAA_9=FE(21.3=100)
C2:
PF127812=AAA_9=FE(23.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGTGGAGAATGGGGTCA
R:
CTGGGTGACAGGGTGAAGTTG
Band lengths:
256-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]