DreEX6092658 @ danRer10
Exon Skipping
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34392921-34394228:-
Coord C1 exon
chr11:34394109-34394228
Coord A exon
chr11:34393540-34393689
Coord C2 exon
chr11:34392921-34393081
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTCTTGTTTTTGCAGGAG
3' ss Score
10.81
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATTGCAGGCCTGCCGAAGGATAGTCTCTCTGTGGAGAATGGAGTAATTGCACAATACTCTCAGCGCTGGCCTCTGTTTATCGATCCGCAGGGACAGGCCAACAAGTGGATCAAGAACATG
Seq A exon
GAGCGTGATAACAGATTGGATGTGATGAAGCTGAGTGACCGGGACTTCCTGCGTAGTTTAGAAAATGCCATCCGTTTTGGGAAGCCTTGCTTGCTGGAGAATGTCGGAGAAGAGCTGGACCCTGCACTGGACCCTGTGCTCCTACGACAG
Seq C2 exon
ACGTATACGCATGAAGGCAACACAGTTCTAAAACTCGGAGACACTATCATTCACTATCATGACGATTTCAAAATGTACATCACCACGAAGCTGCCAAACCCACATTACTCGCCAGAGATCTCTACTAAAGTCACTCTCATCAACTTCACCCTCTCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115-'65-66,'65-64,66-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(17.3=100)
A:
PF127812=AAA_9=FE(21.6=100)
C2:
PF127812=AAA_9=FE(22.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCTCTGTGGAGAATGGAGT
R:
GGCGAGAGGGTGAAGTTGATG
Band lengths:
257-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]