DreINT0009263 @ danRer10
Intron Retention
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21316016-21316460:+
Coord C1 exon
chr7:21316016-21316142
Coord A exon
chr7:21316143-21316273
Coord C2 exon
chr7:21316274-21316460
Length
131 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
TTCTGTGGTGTGTGTTTTAGGTT
3' ss Score
12.69
Exon sequences
Seq C1 exon
ATACACCTGTCGAGGACTGTTTGAGTGTCACAAGTTGCTGTTCAGTTTCCACATGTGTGCCAAGATCCTGGAGGCATCTGGGAAGCTCAACATGGATGAATACAACTTCTTCCTCCGGGGGGGATTG
Seq A exon
GTGAGAGCTTTGGGTGGGGGGGGTGCACTTTGTTCCTGAAAGTGAATTATGGGAAAGGATTGTCTTGCCTTAAAAATGGGGGGAAAAAAGTCCTCATGTTACATACAAAAATTCTGTGGTGTGTGTTTTAG
Seq C2 exon
GTTCTAGATACAAAGAAACAGATGGATAACCCCTGCTCTCACTGGCTGTCGGACTCTAACTGGGACAACATAACTGAACTGGATAAACTGACTAATTTCCATGAACTTATGGCCTCGTTTGAGCAGTACCCTCGAGACTGGCACCACTGGTACACCAATCCAGAACCAGAGAAAGCACCACTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352:ENSDART00000128014:74
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0302810=Dynein_heavy=PU(10.0=93.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCATCTGGGAAGCTCAAC
R:
GGAAGTGGTGCTTTCTCTGGT
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]