RnoINT0048929 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56039389-56041034:-
Coord C1 exon
chr10:56040908-56041034
Coord A exon
chr10:56039576-56040907
Coord C2 exon
chr10:56039389-56039575
Length
1332 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TCTTGTCTCTTTTCCCCAAGGTT
3' ss Score
9.09
Exon sequences
Seq C1 exon
ATATACCTGCCGAACCCTTTTTGAGCGCCACAAGCTTCTGTTCAGTTTTCACATGTGTGCCAAAATCCTGGAGACGTCTGGGAAGCTCAACATGGACGAGTACAACTTCTTTCTGCGTGGGGGTGTG
Seq A exon
GTGAGTTGGTCAGAGGGCACTACCCAGCATGGGGATCAAAGTGGGGGGTGGCAGCAAGTGTGGTGAGAACTCCAGAGTCAGAGCACAGAATCGAAGGCTTCCCAGGTGATCTAAGGAAAACCATGCCAGGAGCGTGAGCTCCTGGGGCTGTGAGGCTGACTTGTCATGTGACTTCTGGTACCCACTTCAAGCTCATCCTCCGAACACTTCTTCCATGAGACCCAGGTATACTTGGCTCTCCTCCTTAAAAAGATAAAAATGTCTGGTGAGTTTCATGTACCTCCAGCCCCAGCAGGACGGGGAAAGACGGGGACAGATGGATGGGATCCCAGGAGCTTCCCACCTACCTAGCCTTGCCTAGCCTAATGGGCAAGCTTCCAGTGCAGTGAGAGATCCCATCTCAAGGGAATAAGTAGAGAGCAATAGAAGATACCCAACATCATTCTCTGACATCCACATACTTGCACACTCATTCGCACCTCACCAGAGACACAGACAGCACACACATATGCGTGCGTACACACCAAAGGGGAAAAACTCCAAATTTTCATTTAAAAGTACGGGTATCTGGACAGATGGGAGGAGTCTGCCAACAGTGGGTTCCGAGCTATTTCTGCCACTAAACCACCAGAGGGCATCAGCTTCCTAAACTTTAACTGTTATGGGTATGTGGTACCACCCCCACCCACCCATCCATCCCTCAGTAAAGGTGGCTCTGCGTCCATCTTGGATTCCTGTCTCCATCTCCTCATTCAGCATGCACTCTGCTTCATACATAACCGACACCAAAGACAGATGGGCCGTCAGACAGGCAGACAGACACAGGACTGGAGAGGAGATAACTTAAAATATGTTTTATTTTTAATTAAAACATAGTAATTTATACAGTCTTATTGAGTATAGCATGGCTTAATTTTTTTTTTTTTTAAGATAAGGCTCTTTATAGCTCAAGCTAGCCTAGGACTCACTCTGTAACCCAGGCTAACCTTGAATTCCTGGTAATTCTTTAGCCTAGCCTGGCACCTGGGTGCTTTGATGACAGGTACCATGCCTAGCTTGCTATGAGGGGTTTCAATATCAGTACATACATACATACATACATACATACATACATACATACATACATACGTGTGTGCACGAATGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGACCAGATCAGGATAGTTGGCATATCCATTTGACATTTTTCTTGTGGTTTTATTTTAGGAACTCTCCTTTTGAGGGTTCCAGGCATCTTGTCTCTTTTCCCCAAG
Seq C2 exon
GTTCTGGATCGGGAGGGCCAAATGGACAACCCATGTACTAGCTGGCTGGCAGATGCCTACTGGGATAACATCACCGAGCTGGACAAACTGACCAACTTCCATGGGCTCATGAACTCCTTCGAGCAGTACCCTCGGGACTGGCACCTGTGGTATACCAACTCTAACCCGGAGAAGGCCATGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:75
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0302810=Dynein_heavy=PU(8.2=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATACCTGCCGAACCCTTTTTGA
R:
GCAGCATGGCCTTCTCCG
Band lengths:
310-1642
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]