DreINT0009321 @ danRer10
Intron Retention
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39610760-39612821:+
Coord C1 exon
chr24:39610760-39611004
Coord A exon
chr24:39611005-39612704
Coord C2 exon
chr24:39612705-39612821
Length
1700 bp
Sequences
Splice sites
5' ss Seq
TCGGTCAGA
5' ss Score
4.35
3' ss Seq
GTCTTTATCTCTCTCTGCAGGTT
3' ss Score
13.33
Exon sequences
Seq C1 exon
GTTGTGGTTGACCAGTCAACCCTCAGACAAGTTTCCGGTGAGTGTTTTGCAGAATGGCGTGAAGATGACAAACGAGCCTCCGAAAGGCCTGAGGGCAAATCTACTTCGTTCTTACCTCAGCGACCCCATCTCAGACCCCACCTTCTTCAACAGCTCCGCTAGGCAGGAGATCTGGCAGAAGCTGCTGTTCGGCCTCTGTTTCTTCCACGCTCTGGTACAAGAGAGGAGAACATTCGGCCCACTCG
Seq A exon
GTCAGATATGCATCTCTAATCCAGTTTGCTTTCCTGTCTGTAATCCTTCATTTGATTCAGCCTCTATCTCTGGAGAACAGGCGGCTGTGATATTATCATCCGTCTACCTGATCTCATCTCTTCTAAACACTCATTATATGACCACAATCAAATGCCGGTTTAATAGGCAGAGACAGTTATGAGTTCAGGAACTGCTTCTCCTGGAAATGATGCTTATTAAAAAGGAACAACTTTCTTCTATAACCGCCTTCTCTTTACACACAGTCGAACGCTAAATTATTTGCCCTCCTTGAATATTTCCCAAGTGGGCGACACCGTGGCTCAGTGGTTAGCACTGTGACCGCAAGTAGGTCACTGGATCGAGTCCCAGTTGGACTAGTTGCCATTTCTGTGTGGAGTTTGCATGTTCTCTCCTTGATGGTGTGGGTTACCTCCAGGGGCTCTGGTTTCCCCCACAGTCCAAACACATGCGCTATAGGAGAATTAATAAGCTAAATTGGCTGTAGTGTGTTTGTGTGTGTTAGTGTGTGTGAATGAGAGTGTATGGATGTTTCCCAGTACTGGGTTGCAGCTGGAAGGACATCCACTGTATAAAACATATGCTGGATAAGTTGAAGGTTCATTCCACTGTGGGGACCCCCCTTATAAAAATGGACAAAGCTGAAGGAAAGGGAATGAATGGATGAATATTTTCCAAGTGATGTTTAAAAAAATCAAGTTAATTTTTATAGTATTTTCTTTAATATTTTTGGGAGAAAGTCTTATTTCTTTAGGTTTGCCTGAAATAAAGGGAGTTTACATTTTTTATATAATTTTTATATATCAATATTATTATTATTATTTATTTATTTTTTTGCCGATTTGCTACAGAACATTGCCTAAAAAATCAAACTTCCCTAATTCTTAGCAGTTAAACCAGGCTCACTAATGCATCTGCTTGCGGAGCTCCACGCCCACTATTATGTATCTTATTAGGTAGACTTGAACCAAAAGTGGGGGGGGGGTCATGGCCCTCTTAAAAAGCACTTAAAAATAAAAATATAATTTTTTTAAATTATTAAATTTCCCAAAAGGGCTAATATTTTAGCCTTCAACTGTATGTTAACTAATAACAAGGCTATTATTAAGAAAACTGATATGATTATTATCCAAAAGTGCACATCTACAATATAACGAAAATTACATAAACAATCAAAAATCCATTCATTCATTCATTCATTCATTTTCTCCCTTTATAAATCAACTTATCCAGCATAGGTTTTATGCAGTGGATGCCCTTACAGCTGCAACCCATCACTGGGAAACATCCATACACACCCATTCACACACATACACTATGGACAATTTAGCCTACCCAATTTACCTATATCGCATGTGTTTGGACTTTGGGGTAATCCGGAGCAACCGGGGTAAACCCAAACCAACAAAGGCAGAACATGCAAACTCCACACAGAAAAGCCAACTAGCCTAGCCGAGGCTCGAACCAGCCACCTTCTTGCTGTGAGGCAATCGTGCTACCCGCTTCACCACCATGACGCCCAAGACAAGAAAATACATTTAACAAGTTCTCCAATAAAGATATTTTACTTTCTTAACATGACTGTGAGCTCATGTTCCTCACAAGACAAGTTCTCTAGTACTTCTCTAGAAGTTTTTATGGTGACACTGAAAGTGTGTTCAGTCTTTATCTCTCTCTGCAG
Seq C2 exon
GTTGGAATATCCCATACGAGTTTAACGAGTCTGACCTGAGAATCAGCATCCGTCAGATCCAGATGTTCCTGGATGAGTATGAGGAGGTCCCACTGGAGGCTCTTACCTACCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468:ENSDART00000142998:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAGTCAACCCTCAGACA
R:
TAGGTAAGAGCCTCCAGTGGG
Band lengths:
346-2046
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]