HsaINT0049724 @ hg38
Intron Retention
Gene
ENSG00000158486 | DNAH3
Description
dynein axonemal heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr16:20952433-20955057:-
Coord C1 exon
chr16:20954813-20955057
Coord A exon
chr16:20952550-20954812
Coord C2 exon
chr16:20952433-20952549
Length
2263 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
CTCTGCTCTCCCACACGCAGGGT
3' ss Score
9.38
Exon sequences
Seq C1 exon
ACTCTGGCTAACCAGCTATCCATCAGAGAAGTTTCCAGTCAGCATTCTCCAGAATGGAATCAAAATGACCAATGAGCCCCCCAAAGGGCTCCGGGCCAACCTGTTGCGCTCCTACCTCAATGACCCCATCTCAGATCCTGTGTTCTTCCAAAGCTGTGCAAAGGCGGTGATGTGGCAAAAGATGTTATTTGGCCTTTGTTTCTTCCACGCCGTTGTTCAAGAGAGAAGAAACTTCGGCCCCCTAG
Seq A exon
GTAAGCGATGACAGTGCACCTGAGTGGCCTGAGGGAAAGGATATCAGACACATATAGGTGTGTTTCCAGGTGCGTGTTTAAGCTTGCGCTCAGATAGGGTTGCCAGTAAGATACGGTATAAATATTTTCCAGGCAATATTTGGAACATACTTATACTAAATGATTTATTATTTAACTAATATTAAACTCTCACTGTATTTTTATTTGCTAAATCTGACAACCTGGCTGGGCGTGGTGACTTGTGCCTTTAATCCCAGCACTTAGGGAGGCCAAGGGAGGCAGAATCCTTGAGGCCAGGAGTTCGAGACCAGCCTGGGTAACATGGTAAAACCCCATCTCTACTAAAAACACAAAAATTAGCCGGGTGTGGTGGTGCCCGCCTATAATCCCAGCTATTTGGGAAGCTGAGGCATGAGAATGGCTTCAACCGGGAGGTGGAGTTTGTAGTGAGCCCATATCACACCACCACACTCCAGCCTGGGTGACAGAGTGAGACCCTGTCTCAAAAAAAAAAAAAAAAAGTCTATAGGTAGATTAATACATAAGCAAAATGTTATATATTCATACAACGAATTTTTTTTTTTTTTTTTGAGATAGGGTCTCACTCTGTCACCCACGCTGGAGTGTGGTGTTGTGATCTTGGCTCATTGCAACCTCCACCTCTCAGGTTCAAGCGATCCTCCCACTTCAGCCTCCCCAGTAGCTGGAACTACAAGCATGCCACCACACCCGGTTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTGGCCAGGCTGGTCTAGAACTCCTGAATATTAATCAACCTTAAAGAGGAAGAAAATTCTGACATACACTACAACGTGGATGAACCTGAGGACATTAGAGGACATTACGCTAAGTGAAATAAACCAGTCATGCCAGGCACAATGGTGCAAGCCTGTAATCCCAGTACTTTGGGAGGCTGAGGTGGGAGGATCGCTTGAGGCGAGAAGGTGGAGGCTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAAACTGGATGACAAAGTAAGACATTGTCTCAAAAAAAAAATTAAAATAAATAAAATAGCCTGACATAGTAGCACAAGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTGGGAGGATCACTTGAGCCTGGGAGTTCGAGGCTGCAGTGAAGGGAGATCATACCACTCTAGACTGGGCAAAAGAACGAGATCCAGTCTCTCAAAAAAAAAAAGCCATGCAAATGTTTGGCTTGCAACTAACTGCCAGTCATGCTTCGTTTGCTGGCACACGAATTTTATTATTTTGTTATAATTTGAAAGCGAGTGTTTGGGAGGAAATTAAACTTCTCTATTGAACCTGGGCGCGATGGTTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACTTGCGATCAGGAGTTCAAGACCAGCCTGGCCAACATGGCGAATCCCCGTCTCTACTAAAACTACGTAAACTAGCTGGGCGTGGTGGCACGTGCCTGTAATCCCAGCCACTCAGGAGGCTGAGACAGGAGAATCTCTTGAACCCAGGAGGTGGAGGTTGCAGTCAGCCGAGATCACGACACTGCATTCCAGCTTGTGGGACAGAGCGAGACTCTGTCTCCAAAAAAAAAAAACAACAAACAAAAAAACAAAACAAACAAAAGCAAAACAAACAAAAAACTTCCCTATTGAGCACAGGTTTCCCCATACTCTTTCTTGTATCCTGCACCATGCCTGGTTTACACATGTATGTCACTTGTTCAGCCCCCAATGGGCATTTATCATTACACCCTTGGAAATACGAGTGGTCATTTCTTTAAGGCTGGCCATTCAGTTTTTCCCGTGAGCTCGAGGAGGGGAATTCTCAGAACCAACGTGGCTCTGTTGCCCAGTCGTAGCTCCTGCTGTCTAGCCATGCCGCGGTGTTATTTTTGGAGCTCCGTGCATTACCGCCATATTCCTGCCAGGCTGAATAATTCTCATTCCACAAATCCCAGGACATTAACATCTTCCTTAACAAATGGGGAGGTATATAAGGAAATTGATTTTAGAATGGATGTTTTCTCAGGCAGAATGGCTCCCATGTTGGTGGTAAACGTCCAGGCTAATAGTTGGCCTCGGTGCTTGATATTCATGAGCCTGAAAGAGGCTTTTGATCCATAATGATGCTTAACTCCCTCGGCTTGGTCTTTGAGTGGAAATTAAGAGCTCTCAGCACTGAAGCCTCTCTCTGCTCTCCCACACGCAG
Seq C2 exon
GGTGGAATATTCCCTATGAATTCAACGAATCTGACCTGAGGATTAGTATGTGGCAGATCCAGATGTTTCTCAATGACTACAAGGAGGTGCCCTTTGATGCTCTGACCTACCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486:ENST00000261383:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development