GgaINT0013872 @ galGal4
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:14989737-14992262:-
Coord C1 exon
chr14:14992018-14992262
Coord A exon
chr14:14989854-14992017
Coord C2 exon
chr14:14989737-14989853
Length
2164 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATCTGTCCTGTATTGAACAGGTT
3' ss Score
8.81
Exon sequences
Seq C1 exon
ACTGTGGTTAACCAGTTATCCATCAGCAGAATTTCCTGTTAGTATTCTCCAGAATGGTGTCAAAATGACAAATGAACCTCCAAAAGGGGTCAGAGCAAACCTCCTTCGATCGTACCTCAATGACCCCATCTCTGACACCGTATTCTTTAGCAGTTGCCAAAAGCCAGAAATGTGGCAAAAATTGTTGTTTGGTCTTTGCTTTTTTCATGCTGTTGTGCAGGAAAGGAGAAACTTTGGCCCATTGG
Seq A exon
GTAAGGTTCAGATTATTTTCCAGGTTGTTTCACAAAGGTTCGTAGTTTTGGAATGCATTACTTATTATTAAAAAGCAGTATTTGCTGTCAGCAGTATTGCAGGAGTGCAATCTGTACTGAACATAATGAGGCTTACAAGCTGTTATCAGTGATTCTTGTTCAAGCAAAGTTACTCTTGAAGCTCCTGTGTTACCCTGGGGGAGGGTTAGAAAGTATCCATCATGTCAATATGGCATACAGTATTTGCATTAAATTATAGCTCACTAAATTAGTTTATTACTCTGCTGTTCAATAACTGCAGTAATTTACTTATCAGTGTACTTATCAGTAGTGCTTCTATTCATGTGTGTATGTTAGCAGAGCCCGTGTGTATGTTTGCTTGGTGCAAAACTGAAAGTCAGTAGCTGCAGTGTGTTCATAATGCAAGAATGAAAAGATGTTAGGTAGCAATAAGGTCTGTTGGTTCATCTTTTTCTGAAATTAATCTACAATTTTAAGTATTTAGAAATATATTGAATTCTGACATTTTCCATAAAATGCAGAAACATAGAAAATTACAGCTTTCATATTTATAACTATATATCTATCTCTTACACTCTCCATTAGTGTACATGAAGCTCTCAGCTTTCCATTCTGTCTGAATCTGCCATTATGGTAACAGTGACTGTTGTGAAATGTTATATTTTCACTGAAAGCCACTGTCCCTGTATTAATAAGCAGCTGTTTGCATTAACACAAGGCTGCCAGGATGAAGTTAGTCCTCACTGGCTGATGTGGTTGCCAGGACACACTCTGTATTTGAAAAGTTATGGCTGCCAGAAGTCCCCAGGGACTGGAAAAAGGGAACCATCACTCATTTACAAGAAAGGGGGAAAGGAGGACCTGGGGAACTATAGGCTGGTGAGCATCACCTCTGTGCCTGGGAAGACCATGGAGCAGATCCTCCTGGAAGAGATGCTAAGGCACATGAGGGATGAGCGGGTGATCTGAGACAGCCAGCATGGCTTCACCAAGGGAAGGTCGTGCCTGACCCATCTGGTGGCCTTCTGTGATGGAGTGATGGCATCAGTGGACAAAGGAAGGGCATCTGGTGTCATCTGCCTGGATGGCCTGCAAGGCCTTTGACATGGTCCTGCACCACATCCTGGTCTCTATGTTGGAGAGAGAGAGAGAGATTTAACAGCTGGACTATTCAGTGGATAAGGAACTGGTTGGGTGGTCGCAGCCAGAGCATTGTGGTCAATGGCACTACGTACAGGTGGAGGCTGACAAGCAGTGTCCCCCAGGGGTCCCTCTTAGGACCGGTGCTCTTCAGCCAACGACACAGAGGACGGGATTGAGTGCACCCTCAGCAGTTTGCTGATGGCACAACAGAAGGGAGGGAAGGCATCCAGAGGGACCTGGACAGGCTCGAGAAGTGGGCACACGAGAACCTGATGAGGTTGAGCAAGGCCCAGTGCGGGGTGTTGTACTTGGGTGGGGGCAATCCCAGATGTGTGCAGACTGGGAGAAGAACTCACGGAGAGCAGCCCTGCGGAGAAGGCCATGGGGGTTCTGGTAGACGAAGAGCTGGACGTGAGCCTGGAAGGCCGACTGCATTCTGGGCTGGGGGGAGAAGGATGGTTGCGGAAATTAACCCATTTATTGGTTTGTGCTGGACCTGGGTTTTCTGGAGGATTCCTTTAGCTAGAGCATACTCCTGGTTGTTGCTTTTTTGTTGCTTTTTTTTATTATTGTACTGCTACTCTGACTATTGTATGGGTTGATGGGCGGATTTTCTAAAAACAGAAATCAGTCAGTTAATTTAAACTCCTGTTCTCATTGTCTGCAGATTGCAGAAGACTAGTTGAAGAAACAAACAGATCTCTGTTCTACTTTGGGTAAAACATAATGTTTCAGGAGTGAGTGATGCCAGATGTCTATACTGATGTTTTACTTCTGCAGAGTGAAAGAGCCTTGGGATACAATTCTGTTACAGAATGGTGTTTCTCACCAGGCTGTTTATTGTTCAAGTAGATGCCGGGGCTTCACCTTGGTATTGTCTGGAAGTTGTGATCTTCAGCTCTACAATAGCAATGTTACACCAATTCCATCATTTCCTAAGCGTAGTTTTCAGCACAGGGCAGCAGTCATTCACTCCACGTATCTGTCCTGTATTGAACAG
Seq C2 exon
GTTGGAATATTCCATATGAGTTCAACGAGTCTGACCTCAGGATCAGCATGCAGCAGATACACATGTTTTTGAATGAATATGAAGAAGTCCCTTTTGAAGCTCTGACATATCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]