GgaEX0002954 @ galGal4
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:14989737-14995851:-
Coord C1 exon
chr14:14993710-14995851
Coord A exon
chr14:14992018-14992262
Coord C2 exon
chr14:14989737-14989853
Length
245 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTTTTTTTTTGCAGACT
3' ss Score
10.66
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GAAGGATAAGCTGTTATTCTCCCTCCTCCTGACAGTGGGCATAATGAAGGGAAGAGGCCAAATAGATGATGAAGTTTGGCGTTTCCTACTGACAGGAGGAGTTGCTCTTGACAACCCTCATCCTAACCCAGCTCCAGATTGGCTCTCTGACAAATCCTGGGCAGAGTTTGTGCGTGCATCTTGTCTGACAAACCTACAGGGACTGATGGAACATGTAAGAGATAATTTTTCAAAATGGAAGCAAATCTATGACTCTGCAAGACCCCATGAAGAAAATTTCCCAGATGCGTGGAACACATCAACGGGATTGGATCGTATGGTGATTCTCAGGTGCTTGAGACCTGACAAAATAGTTCCAGCAGTGCAGAAGTTCATCGTAGAAAACATGGGAAGAACGTTTATTGAACCGCCTACTTTTGATCTTGGACGAAGCTACAGTGATTCCAATTGCTGTGCCCCTTTGATTTTTGTGTTATCACCAGGTGCTGACCCCATGGCAG
Seq A exon
ACTGTGGTTAACCAGTTATCCATCAGCAGAATTTCCTGTTAGTATTCTCCAGAATGGTGTCAAAATGACAAATGAACCTCCAAAAGGGGTCAGAGCAAACCTCCTTCGATCGTACCTCAATGACCCCATCTCTGACACCGTATTCTTTAGCAGTTGCCAAAAGCCAGAAATGTGGCAAAAATTGTTGTTTGGTCTTTGCTTTTTTCATGCTGTTGTGCAGGAAAGGAGAAACTTTGGCCCATTGG
Seq C2 exon
GTTGGAATATTCCATATGAGTTCAACGAGTCTGACCTCAGGATCAGCATGCAGCAGATACACATGTTTTTGAATGAATATGAAGAAGTCCCTTTTGAAGCTCTGACATATCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350_MULTIEX1-2/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(59.0=29.0),PF127812=AAA_9=WD(100=32.3),PF0302810=Dynein_heavy=PU(18.4=18.3)
A:
PF0302810=Dynein_heavy=FE(11.5=100)
C2:
PF0302810=Dynein_heavy=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCTGCAAGACCCCATGA
R:
GCATGCTGATCCTGAGGTCAG
Band lengths:
302-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]