DreEX0003678 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39606896-39612821:+
Coord C1 exon
chr24:39606896-39607121
Coord A exon
chr24:39610760-39611004
Coord C2 exon
chr24:39612705-39612821
Length
245 bp
Sequences
Splice sites
3' ss Seq
TAAATTCCTGGTGTTTTTAGGTT
3' ss Score
8.8
5' ss Seq
TCGGTCAGA
5' ss Score
4.35
Exon sequences
Seq C1 exon
GACTACTGAAGTTTGCGGATGATTTGGGTATGGGCGGCAGTAGGACCCAGACAATCTCTCTGGGTCAGGGTCAAGGGCCTGTAGCTGAGCAGCTGATCAAGGCCGCACTGAGCGTCGGCCACTGGGTGGTGCTGCAGAACTGCCACCTCGCAACCAGCTGGATGCCAACCTTAGAGAAGATCTGTGAGGAGGTCATCACACCTGAAAACACACACACCAGCTTCAG
Seq A exon
GTTGTGGTTGACCAGTCAACCCTCAGACAAGTTTCCGGTGAGTGTTTTGCAGAATGGCGTGAAGATGACAAACGAGCCTCCGAAAGGCCTGAGGGCAAATCTACTTCGTTCTTACCTCAGCGACCCCATCTCAGACCCCACCTTCTTCAACAGCTCCGCTAGGCAGGAGATCTGGCAGAAGCTGCTGTTCGGCCTCTGTTTCTTCCACGCTCTGGTACAAGAGAGGAGAACATTCGGCCCACTCG
Seq C2 exon
GTTGGAATATCCCATACGAGTTTAACGAGTCTGACCTGAGAATCAGCATCCGTCAGATCCAGATGTTCCTGGATGAGTATGAGGAGGTCCCACTGGAGGCTCTTACCTACCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'47-49,'47-48,49-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.5=100)
A:
PF0302810=Dynein_heavy=FE(11.5=100)
C2:
PF0302810=Dynein_heavy=FE(5.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGATTTGGGTATGGGCGG
R:
CCAGTGGGACCTCCTCATACT
Band lengths:
306-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]