HsaEX6042680 @ hg19
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:20963755-20970726:-
Coord C1 exon
chr16:20970501-20970726
Coord A exon
chr16:20966135-20966379
Coord C2 exon
chr16:20963755-20963871
Length
245 bp
Sequences
Splice sites
3' ss Seq
TGGGTCCATTGTTCTTCCAGACT
3' ss Score
7.72
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GCCTGCTGAAGTTTGCTGATGATCTTGGTATGGGAGGTACCAGAACACAGACCATCTCCCTTGGCCAAGGCCAAGGCCCTATTGCTGCCAAAATGATCAACAATGCCATCAAAGACGGGACCTGGGTGGTCTTACAGAACTGCCACCTGGCCGCAAGCTGGATGCCTACCCTGGAGAAGATTTGTGAGGAGGTGATTGTTCCTGAGAGCACCAATGCCAGATTCAG
Seq A exon
ACTCTGGCTAACCAGCTATCCATCAGAGAAGTTTCCAGTCAGCATTCTCCAGAATGGAATCAAAATGACCAATGAGCCCCCCAAAGGGCTCCGGGCCAACCTGTTGCGCTCCTACCTCAATGACCCCATCTCAGATCCTGTGTTCTTCCAAAGCTGTGCAAAGGCGGTGATGTGGCAAAAGATGTTATTTGGCCTTTGTTTCTTCCACGCCGTTGTTCAAGAGAGAAGAAACTTCGGCCCCCTAG
Seq C2 exon
GGTGGAATATTCCCTATGAATTCAACGAATCTGACCTGAGGATTAGTATGTGGCAGATCCAGATGTTTCTCAATGACTACAAGGAGGTGCCCTTTGATGCTCTGACCTACCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'58-60,'58-59,59-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.5=100)
A:
PF0302810=Dynein_heavy=FE(11.5=100)
C2:
PF0302810=Dynein_heavy=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGGTACCAGAACACAGA
R:
GGTCAGAGCATCAAAGGGCAC
Band lengths:
303-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)