BtaEX6109053 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:18856318-18862865:-
Coord C1 exon
chr25:18862640-18862865
Coord A exon
chr25:18859284-18859528
Coord C2 exon
chr25:18856318-18856434
Length
245 bp
Sequences
Splice sites
3' ss Seq
TGGATCTGTTTCTTTTCTAGACT
3' ss Score
9.72
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
GCCTGCTGAAATTTGCTGATGATCTTGGCATGGGAGGTACCAAAACACAGACCATCTCCCTTGGCCAAGGCCAAGGCCCTATTGCTGCCAAAATGATCAACAGTGCCATCAGAGATGGGACCTGGGTGGTCTTACAGAATTGTCATCTGGCCACAAGCTGGATGCCTGCTCTGGAGAAGATCTGTGAGGAGGTGATTGTTCCTGAGAGCACCAACGTGGGATTCAG
Seq A exon
ACTCTGGTTAACCAGCTATCCATCAGAGAAGTTTCCAGTCAGCATCCTCCAGAATGGGATTAAAATGACCAATGAGCCCCCTAAAGGGCTCCGGGCCAATCTTTTGCGCTCTTACCTCAATGACCCCATCTCAGACCCTGTGTTCTTCCAAAGCTGTACCAAAGCAGTGATGTGGCAAAAGCTATTGTTTGGCCTTTGCTTCTTCCATGCCATCGTTCAAGAGAGGAGAAACTTTGGACCCCTAG
Seq C2 exon
GTTGGAATATTCCTTATGAATTCAATGAATCTGACCTGAGGATTAGTATGCGACAGATCCAGATGTTTCTGAATGATTACAAGGAGGTGCCATTTGATGCTCTGACCTACCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'55-57,'55-56,56-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.5=100)
A:
PF0302810=Dynein_heavy=FE(11.5=100)
C2:
PF0302810=Dynein_heavy=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTGGCATGGGAGGTACCA
R:
GAGCATCAAATGGCACCTCCT
Band lengths:
307-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]