GgaEX0002954 @ galGal3
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15705615-15708700:-
Coord C1 exon
chr14:15708475-15708700
Coord A exon
chr14:15707896-15708140
Coord C2 exon
chr14:15705615-15705731
Length
245 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTTTTTTTTTGCAGACT
3' ss Score
10.66
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTTTGCTAAAATTTGCTGACGATGTTGGCATGGGAGGTGCAAACATTCAGACTGTTTCGCTTGGACAAGGTCAGGGCCCAATAGCAGCCAACATGATCCGCCAGGCAGTCACTGTTGGGAGCTGGGTGGTGTTGCAGAACTGCCATCTTGCAACCAGCTGGATGCCTGCTTTGGAGAAAATCTGTGAGGAAGTGATAGTGCCTGAGAGCACCAATGATAAGTTCCG
Seq A exon
ACTGTGGTTAACCAGTTATCCATCAGCAGAATTTCCTGTTAGTATTCTCCAGAATGGTGTCAAAATGACAAATGAACCTCCAAAAGGGGTCAGAGCAAACCTCCTTCGATCGTACCTCAATGACCCCATCTCTGACACCGTATTCTTTAGCAGTTGCCAAAAGCCAGAAATGTGGCAAAAATTGTTGTTTGGTCTTTGCTTTTTTCATGCTGTTGTGCAGGAAAGGAGAAACTTTGGCCCATTGG
Seq C2 exon
GTTGGAATATTCCATATGAGTTCAACGAGTCTGACCTCAGGATCAGCATGCAGCAGATACACATGTTTTTGAATGAATATGAAGAAGTCCCTTTTGAAGCTCTGACATATCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350_MULTIEX1-2/4=1-3
Average complexity
S*
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.5=100)
A:
PF0302810=Dynein_heavy=FE(11.7=100)
C2:
PF0302810=Dynein_heavy=FE(5.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGGAGGTGCAAACATTC
R:
TGTCAGAGCTTCAAAAGGGAC
Band lengths:
306-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]