MmuEX0015003 @ mm9
Exon Skipping
Gene
ENSMUSG00000052273 | Dnahc3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:127080484-127087200:-
Coord C1 exon
chr7:127086975-127087200
Coord A exon
chr7:127082303-127082547
Coord C2 exon
chr7:127080484-127080600
Length
245 bp
Sequences
Splice sites
3' ss Seq
TGTGTCCTTTGAATTTCCAGGCT
3' ss Score
9.06
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
GTCTGCTGAAGTTTGCTGATGATGTTAGCATGGGAGGCACTAAAACACAGACCATCTCCCTTGGTCAAGGCCAAGGTCCTATTGCTGCCAATATGATCAACAAAGCCATCCATGAAGGGACCTGGGTGGTCCTACAGAACTGCCACCTGGCTACAAGCTGGATGCCAGCGTTAGAGAAGATTTGTGAGGAGGTGATTGTCCCTGAGAACACCAACTCAGAGTTCAG
Seq A exon
GCTCTGGCTAACTAGCTATCCATCAGAGAAGTTTCCCGTCAGCATTCTCCAGAATGGGATCAAAATGACCAACGAGCCCCCCAAAGGACTTAGGGCCAACCTTCTGCGTTCCTACCTCAATGACCCAATCTCAGACCCTTTGTTCTTCCAGAGCTGTACAAAGCCAGTTATATGGCAGAAACTGTTGTTTGGGCTTTGCTTCTTCCATGCCATTGTCCAGGAGAGGAGGAACTATGGAGCCCTAG
Seq C2 exon
GTTGGAACATCCCTTATGAATTCAATGAATCTGACCTGAGGATTAGCATGCGGCAGATCCAGATGTTCCTCAATGATTACGAAGAGGTGCCCTTCGAGGCTCTGACCTACTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'52-54,'52-53,53-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.5=100)
A:
PF0302810=Dynein_heavy=FE(11.5=100)
C2:
PF0302810=Dynein_heavy=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGCACTAAAACACAGACC
R:
AGTAGGTCAGAGCCTCGAAGG
Band lengths:
306-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: