GgaEX0002953 @ galGal4
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:14989737-14995851:-
Coord C1 exon
chr14:14993710-14995851
Coord A exon
chr14:14992597-14992822
Coord C2 exon
chr14:14989737-14989853
Length
226 bp
Sequences
Splice sites
3' ss Seq
TGCACGTGTACAACTTGTAGGTT
3' ss Score
5.19
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
GAAGGATAAGCTGTTATTCTCCCTCCTCCTGACAGTGGGCATAATGAAGGGAAGAGGCCAAATAGATGATGAAGTTTGGCGTTTCCTACTGACAGGAGGAGTTGCTCTTGACAACCCTCATCCTAACCCAGCTCCAGATTGGCTCTCTGACAAATCCTGGGCAGAGTTTGTGCGTGCATCTTGTCTGACAAACCTACAGGGACTGATGGAACATGTAAGAGATAATTTTTCAAAATGGAAGCAAATCTATGACTCTGCAAGACCCCATGAAGAAAATTTCCCAGATGCGTGGAACACATCAACGGGATTGGATCGTATGGTGATTCTCAGGTGCTTGAGACCTGACAAAATAGTTCCAGCAGTGCAGAAGTTCATCGTAGAAAACATGGGAAGAACGTTTATTGAACCGCCTACTTTTGATCTTGGACGAAGCTACAGTGATTCCAATTGCTGTGCCCCTTTGATTTTTGTGTTATCACCAGGTGCTGACCCCATGGCAG
Seq A exon
GTTTGCTAAAATTTGCTGACGATGTTGGCATGGGAGGTGCAAACATTCAGACTGTTTCGCTTGGACAAGGTCAGGGCCCAATAGCAGCCAACATGATCCGCCAGGCAGTCACTGTTGGGAGCTGGGTGGTGTTGCAGAACTGCCATCTTGCAACCAGCTGGATGCCTGCTTTGGAGAAAATCTGTGAGGAAGTGATAGTGCCTGAGAGCACCAATGATAAGTTCCG
Seq C2 exon
GTTGGAATATTCCATATGAGTTCAACGAGTCTGACCTCAGGATCAGCATGCAGCAGATACACATGTTTTTGAATGAATATGAAGAAGTCCCTTTTGAAGCTCTGACATATCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350_MULTIEX1-1/4=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(59.0=29.0),PF127812=AAA_9=WD(100=32.3),PF0302810=Dynein_heavy=PU(18.4=18.3)
A:
PF0302810=Dynein_heavy=FE(10.5=100)
C2:
PF0302810=Dynein_heavy=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCTGCAAGACCCCATGA
R:
GCATGCTGATCCTGAGGTCAG
Band lengths:
302-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]