BtaEX6109052 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:18859284-18872246:-
Coord C1 exon
chr25:18870105-18872246
Coord A exon
chr25:18862640-18862865
Coord C2 exon
chr25:18859284-18859528
Length
226 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTTCCTGATCTCAGGCC
3' ss Score
8.6
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAAGGACAAGCTGCTTTTCTCCCTCCTCTTGACAATAGGAATCATGAAAGAGAAAAAGCAAATTAATGAGGAAATTTGGTACTTTCTTCTAACTGGAGGCATTGCCCTGGACAACCCTTTTCCCAACCCAGTTTCTGAGTGGCTGTCTGAGAAGGCATGGGCAGAAGTGGTCCGTGCATCGGCATTGCCAAAACTGAAAGGCCTTATGGAACATTTGGAACAAAATGGTAATGAATGGAAGTTCATCTATGACTCAGCCTGGCCCCATGAGGAAACATTCCCTGGATCTTGGAAGTTTCTTCATGGTTTGGAGAGGATGGTGATCCTCCGATGTTTGCGGCCTGACAAAATGATTCCAGCCATTCGGGGGTTCATTGCTGAACACATGGGAAGTGTGTACATTGAAGCCCCTACGTTTGATCTCCAGGGGTCCTACAGTGATTCCAACTGCTGTGCACCGTTGATATTTGTGTTATCTCCAGGTGCAGACCCAATGGCAG
Seq A exon
GCCTGCTGAAATTTGCTGATGATCTTGGCATGGGAGGTACCAAAACACAGACCATCTCCCTTGGCCAAGGCCAAGGCCCTATTGCTGCCAAAATGATCAACAGTGCCATCAGAGATGGGACCTGGGTGGTCTTACAGAATTGTCATCTGGCCACAAGCTGGATGCCTGCTCTGGAGAAGATCTGTGAGGAGGTGATTGTTCCTGAGAGCACCAACGTGGGATTCAG
Seq C2 exon
ACTCTGGTTAACCAGCTATCCATCAGAGAAGTTTCCAGTCAGCATCCTCCAGAATGGGATTAAAATGACCAATGAGCCCCCTAAAGGGCTCCGGGCCAATCTTTTGCGCTCTTACCTCAATGACCCCATCTCAGACCCTGTGTTCTTCCAAAGCTGTACCAAAGCAGTGATGTGGCAAAAGCTATTGTTTGGCCTTTGCTTCTTCCATGCCATCGTTCAAGAGAGGAGAAACTTTGGACCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'54-56,'54-55,55-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(59.0=29.0),PF127812=AAA_9=WD(100=32.3),PF0302810=Dynein_heavy=PU(18.4=18.3)
A:
PF0302810=Dynein_heavy=FE(10.5=100)
C2:
PF0302810=Dynein_heavy=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGATTCCAGCCATTCGGGG
R:
CAGGGTCTGAGATGGGGTCAT
Band lengths:
292-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]