GgaEX0002955 @ galGal4
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:14988536-14995851:-
Coord C1 exon
chr14:14993710-14995851
Coord A exon
chr14:14989737-14989853
Coord C2 exon
chr14:14988536-14988690
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATCTGTCCTGTATTGAACAGGTT
3' ss Score
8.81
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GAAGGATAAGCTGTTATTCTCCCTCCTCCTGACAGTGGGCATAATGAAGGGAAGAGGCCAAATAGATGATGAAGTTTGGCGTTTCCTACTGACAGGAGGAGTTGCTCTTGACAACCCTCATCCTAACCCAGCTCCAGATTGGCTCTCTGACAAATCCTGGGCAGAGTTTGTGCGTGCATCTTGTCTGACAAACCTACAGGGACTGATGGAACATGTAAGAGATAATTTTTCAAAATGGAAGCAAATCTATGACTCTGCAAGACCCCATGAAGAAAATTTCCCAGATGCGTGGAACACATCAACGGGATTGGATCGTATGGTGATTCTCAGGTGCTTGAGACCTGACAAAATAGTTCCAGCAGTGCAGAAGTTCATCGTAGAAAACATGGGAAGAACGTTTATTGAACCGCCTACTTTTGATCTTGGACGAAGCTACAGTGATTCCAATTGCTGTGCCCCTTTGATTTTTGTGTTATCACCAGGTGCTGACCCCATGGCAG
Seq A exon
GTTGGAATATTCCATATGAGTTCAACGAGTCTGACCTCAGGATCAGCATGCAGCAGATACACATGTTTTTGAATGAATATGAAGAAGTCCCTTTTGAAGCTCTGACATATCTAACAG
Seq C2 exon
GGGAATGTAACTATGGGGGGAGAGTAACAGACGATAAAGACAGGCGGCTTCTTCTGTCCCTTCTGTCTACAGTCTACAACAAGGATATAGAGCAGGACAAGTACATGCTTGCACCTGGCGGTGACTACTATATCCCACCACATGGTCCATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350_MULTIEX1-3/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(59.0=29.0),PF127812=AAA_9=WD(100=32.3),PF0302810=Dynein_heavy=PU(18.4=18.3)
A:
PF0302810=Dynein_heavy=FE(5.5=100)
C2:
PF0302810=Dynein_heavy=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGATTGGATCGTATGGTG
R:
CAGAAGAAGCCGCCTGTCTTT
Band lengths:
255-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]