BtaEX6109054 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:18852838-18859528:-
Coord C1 exon
chr25:18859284-18859528
Coord A exon
chr25:18856318-18856434
Coord C2 exon
chr25:18852838-18852992
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTCATCTTTGCCTCATGCAGGTT
3' ss Score
9.12
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ACTCTGGTTAACCAGCTATCCATCAGAGAAGTTTCCAGTCAGCATCCTCCAGAATGGGATTAAAATGACCAATGAGCCCCCTAAAGGGCTCCGGGCCAATCTTTTGCGCTCTTACCTCAATGACCCCATCTCAGACCCTGTGTTCTTCCAAAGCTGTACCAAAGCAGTGATGTGGCAAAAGCTATTGTTTGGCCTTTGCTTCTTCCATGCCATCGTTCAAGAGAGGAGAAACTTTGGACCCCTAG
Seq A exon
GTTGGAATATTCCTTATGAATTCAATGAATCTGACCTGAGGATTAGTATGCGACAGATCCAGATGTTTCTGAATGATTACAAGGAGGTGCCATTTGATGCTCTGACCTACCTGACAG
Seq C2 exon
GGGAATGTAATTATGGAGGCAGAGTAACGGATGACAAAGATAGGAGGCTCCTGCTATCCCTTCTGTCCACGTTCTACTGTAAGGAAATCGAGCAGGACCATTACTTTCTTGCTCCTGGAGACACTTACTACATCCCTCCTCATGGCTCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'56-58,'56-57,57-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.5=100)
A:
PF0302810=Dynein_heavy=FE(5.5=100)
C2:
PF0302810=Dynein_heavy=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAGCAGTGATGTGGCAA
R:
CTGGTAGGAGCCATGAGGAGG
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]