HsaEX6042681 @ hg38
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein axonemal heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr16:20948483-20955057:-
Coord C1 exon
chr16:20954813-20955057
Coord A exon
chr16:20952433-20952549
Coord C2 exon
chr16:20948483-20948637
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTCTCCCACACGCAGGGT
3' ss Score
9.38
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ACTCTGGCTAACCAGCTATCCATCAGAGAAGTTTCCAGTCAGCATTCTCCAGAATGGAATCAAAATGACCAATGAGCCCCCCAAAGGGCTCCGGGCCAACCTGTTGCGCTCCTACCTCAATGACCCCATCTCAGATCCTGTGTTCTTCCAAAGCTGTGCAAAGGCGGTGATGTGGCAAAAGATGTTATTTGGCCTTTGTTTCTTCCACGCCGTTGTTCAAGAGAGAAGAAACTTCGGCCCCCTAG
Seq A exon
GGTGGAATATTCCCTATGAATTCAACGAATCTGACCTGAGGATTAGTATGTGGCAGATCCAGATGTTTCTCAATGACTACAAGGAGGTGCCCTTTGATGCTCTGACCTACCTGACAG
Seq C2 exon
GGGAATGTAATTACGGAGGCAGAGTGACTGATGACAAAGACCGGCGTCTCCTGCTGTCACTTCTGTCCATGTTCTACTGTAAGGAAATTGAGGAGGACTATTACTCCCTCGCTCCTGGAGACACTTACTACATCCCTCCTCATGGCTCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'88-94,'88-92,89-94
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.5=100)
A:
PF0302810=Dynein_heavy=FE(11.7=100)
C2:
PF0302810=Dynein_heavy=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAAAGCTGTGCAAAGGC
R:
GGAGCCATGAGGAGGGATGTA
Band lengths:
250-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains