MmuEX6013667 @ mm9
Exon Skipping
Gene
ENSMUSG00000052273 | Dnahc3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:127074932-127082547:-
Coord C1 exon
chr7:127082303-127082547
Coord A exon
chr7:127080484-127080600
Coord C2 exon
chr7:127074932-127075086
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCTGCCTCTTTCAGGTT
3' ss Score
12.7
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
GCTCTGGCTAACTAGCTATCCATCAGAGAAGTTTCCCGTCAGCATTCTCCAGAATGGGATCAAAATGACCAACGAGCCCCCCAAAGGACTTAGGGCCAACCTTCTGCGTTCCTACCTCAATGACCCAATCTCAGACCCTTTGTTCTTCCAGAGCTGTACAAAGCCAGTTATATGGCAGAAACTGTTGTTTGGGCTTTGCTTCTTCCATGCCATTGTCCAGGAGAGGAGGAACTATGGAGCCCTAG
Seq A exon
GTTGGAACATCCCTTATGAATTCAATGAATCTGACCTGAGGATTAGCATGCGGCAGATCCAGATGTTCCTCAATGATTACGAAGAGGTGCCCTTCGAGGCTCTGACCTACTTGACAG
Seq C2 exon
GTGAATGTAATTATGGAGGCAGAGTGACTGATGACAAAGATAGGCGTCTCCTGCTGTCCCTCCTGTCCATGTTCTACTGTAAAGAAATTGAAACAGATAACTATCACATTGCTCCTGGAGATGCTTATGTCATCCCCCCCTATGGCTCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'53-55,'53-54,54-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.5=100)
A:
PF0302810=Dynein_heavy=FE(5.5=100)
C2:
PF0302810=Dynein_heavy=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGTCAGCATTCTCCAGAA
R:
TCATCAGTCACTCTGCCTCCA
Band lengths:
246-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: