DreINT0009323 @ danRer10
Intron Retention
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39612705-39613980:+
Coord C1 exon
chr24:39612705-39612821
Coord A exon
chr24:39612822-39613822
Coord C2 exon
chr24:39613823-39613980
Length
1001 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
CTCGTGTGTGTTTCCTGTAGGAG
3' ss Score
10.34
Exon sequences
Seq C1 exon
GTTGGAATATCCCATACGAGTTTAACGAGTCTGACCTGAGAATCAGCATCCGTCAGATCCAGATGTTCCTGGATGAGTATGAGGAGGTCCCACTGGAGGCTCTTACCTACCTGACAG
Seq A exon
GTGATTCAACAAGCAACACACTCTACCAGCCTCCTAACTATACTCTAACATTTACCCAATATTGCTCTAGCCATTGTTATCTGCACAGTCATAACCACTTAATGGACTTTTTTCACATTTCCGGGTGTCCCAGCAGCAGAAGTCATCATAGTTAGTGGTCACACTTTACAATAAGGTTCATTAGGTATTGTTAATTAATACATTTACTAACATGAACAAACAACGAACAATTCATCTACTACTGTATTTGTTCATGTTAGTTAACGTTAGTTAATGAAAATACAGTAGTTCATTGTTAGTTTAACTCATGGTGCATTAACTAATGTTAACAAGCATGGACTTGGATGTTATTAATGCATTAGTAAATGTTCAATTATGATTAATAAATGCTCTACATGTGTTGTTCATGATTAGTTCATGTTAGTAAATGCATTAACTAATGAACCTTATTATAAAGTGTTACCTAGTTAGTAAACTTAGAGTGTAGTGAAGTAGGAAGAGTACAACAAATAATTTCTTTACAAGCCTATTGGGTGAAATAATAAAAGAAAAATGTGTCGATGGTGTTATCAAGACCTTTACAAAAAGGAAATGTAATGTGAGACTGATAACGGCAGCCAAAAGAGAAAACAACACCGAATGTACTGCCCTGCTGCCATACATACATGCTGCATCACAAACACCTCACATAAGCAGTATTTATTCTTTTGTAATTTGATGCATATATTATATAATACAAACGTAAATACATAAAAATGTACACACAATCTATTGAATAATATAAATATTAAAACATTTAAAGGATTTAAGATGCTGATGACTGCTAAATGAATCATAACAGTCTTGTGAAAAGGCTCCGTAACAGTTTGGCAACACCCTAGTATTGCAACAACTTTTACTCTGTAGGCAAACATCCTATTTTACCTAATGCAAACACATGTCTACAGTATTTAATGGAATATAGTGTGACTGTTGAGTTGACTCGTGTGTGTTTCCTGTAG
Seq C2 exon
GAGAGTGTAATTATGGTGGGAGGGTGACTGACGATAAGGACCGGAGACTGCTGATGTCTCTCCTCTCCATCTTCTACAGCTGGCAGCTCATTCAGCAGGACCAGTATCGTGTGTGTGAGGGAGATCTGTATTATGTGCCTTCACATGCTCCTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468:ENSDART00000142998:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATATCCCATACGAGTTTAACGA
R:
GGTAAGGAGCATGTGAAGGCA
Band lengths:
271-1272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]