RnoINT0000695 @ rn6
Intron Retention
Gene
ENSRNOG00000054843 | AABR07005593.1
Description
NA
Coordinates
chr1:189698755-189703841:-
Coord C1 exon
chr1:189703359-189703841
Coord A exon
chr1:189698910-189703358
Coord C2 exon
chr1:189698755-189698909
Length
4449 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
CTGCTTTCTGTTGCTCCCAGGGG
3' ss Score
9.44
Exon sequences
Seq C1 exon
CTCTGCCACCCAGCCATGGCTACTGCTCTCAGCTATGCTGTACATGTTATTTTTGGAGCCCTGTGCTTTACCACAGTCTTCCAGGCAGGCTGAATAAATCTGTCTCACAGAACCCAGGATGTTAACATCTTCCTTAACAAATGGGGAGATTTGTAAGGAAACCAATTCTAGGATGGGTATTTTCTCGGGCAGAATGGCTGCCATTTTGGCAATAAATCAAGGTAAATAGTTGGCTGGGTGCTGGATACTCAGAGGGCTGAAAGAGGCCCTTGATCCATAATGATGCTTACCTTACATGCTCAGTCTCTGAGTGGAAATTAAGAGCTCTCAGCTCTGAAGCCTGTAATTCTTCTCTGCCTCTTTCAGGTTGGAACATTCCTTATGAATTCAATGAATCTGACCTGAGGATTAGCATGCGGCAGATCCAGATGTTTCTCAATGATTACAAAGAGGTGCCTTTTGAGGCTCTGACCTACCTGACAG
Seq A exon
GTATTTATGGACAGAGATTTGCTGCCCTAATCTTCTGGTACCATTTCCATGTCCCTGCTCTTCAGCTCCTAGCCTCCTACCCTCCCTTACTCATTCAACAGGTACTGATCTCTTGTTAAGGTTTTGTCATGTTGGATACAAACAAAACCCGAATTAAGATGAGGCTCGTGTGGTCAGGTGATTTACAGTCTAAGATGGTAGGAAAATATAAATAAATAATGTATAATATATGACAATACAATTTTAAGTACACTGACAGAAGCACTTATGGGTTGAAGAGATAGTCTATCAAGTACTTTCTACATGACCGTGAAGACCTGAACGCACCCTTAGAAAGACCCAGAACACACATAAAGAGCTGTGGCATGTGCTTGTAATCCCAATGCTAGAGAGGCAGAAGATGGTTAGAGTTTGCTAGCCAGCAGCGTAGCATAAATAGCAAGTACCAGGACAATGAGAGGTGTTGCTTCATAAAGCAAGGTGGACAGTACCTGAGCAGGCATGATACCTGAGGCCTCCACACATACGTGCACATACAGGCACATGTAAAAGATAGAAGGGCTGAATAGGTGGCTGCTCTTCCGCAGTACTGTAGAGGGCATATTCCCAGATAAGTACTGGAGAATCCAGGAATGCTAATCACACAAGGTTGTCTTCTCAGTAGGGGAAATGTATGCCTGGTTTCCACCCAGAAGGCTGAGAGTGGAGGTTGTTAATAACCTGGTGGCCTTTGCTACTGTAGAGCACACCCCAACACCCCAGAATGTTTCTCTCAGGCTGTCCATCCGTGCACCTTTATCTTTGTTTCTTGGTTGATAGAGGAGATGCCGAGTGTACTTTATAGCCCAGTGACCTCTTTGCTATCTCTGTCAGAGACCACTCTAGATCCTAGATCCATAAGCTACAAAATCCATCTTCATGGTAGATAGAGGTCGCATGTACTCTGCAAAAGAGTTTTCATATCTGAAGCTTTACTGTGCTCATGGAATTATTGTTAATGGGAAGCTTCTTTCCCAAAATTGTACAGGATTTAAAATAAACTGACACGGTGTCACACTCCAGAAGTTTGAGCAAACACCTACTAAGTAAGTCATGCTGAACCAAGTTTCCTTCCCACCTCCATGAGGATCCTTTGATGCTTGCAGGGATCCTCAGCCCCACAGGACCTGGGTTTGTTTTCCAGCACCCACATGGTGGTTAACACCTGTCTGTAACTCCACTTCCAGGGATCCAATGCTTTCTTCTGGCCTCCTCAGGCACTGCGCACACATGGTGCATAGAAATACATACTGGCAGAACATCCATGAACACAAAGTAAGAATTCTTAAACATTTTAAGAAAGAGAAACTTTTTAAAACATAAAGGCAATACCACGATTACATCTCAGAGTAGGGGAAGACAATCCTGGAAAACTTCTAGAAGTTTTAAGAAGGGTCAGCGTGAGGACTCAGTAGTAGATTTATAAAAAGAAGGAAGAAGAGGAGAAGGTAGGGAGGGAAGAAGAGTATTTTCAACATGAGATCTTGAAGTGGGGATGTTATAAGCTGATTAGATCAAAGCAATTACTTGGTGATTTTTTTTTACCCTTATCACTCAATATATACTAGTCTGCAATACAGAAGAATTCAGACAGAAAAAGTTTGCTCGCTGTCCTCAAAGAATACACAACAAAATCCCAAGGAAAGAAGAGAAAATATAATGTACTGCATTAACTCATATAGTTTAGTCAAGGGTCCACACGTAGCTCAGTAGGAAGATTGTGTTATGTTAAAGATCTTACACAGGTTCCCCCTTCAGGTCCACGAGTGAAGAGCTTGTCCAGATCCTGTCACCAAGCACTAAAATTCCCCGAGCATTTCTGCCCCACCTCCTTGGATAGTTGGCAATATCTGAAGGCGGATTTGGTTTTTTGTAATGAAGAGGAAAATGCTATTTATATCTAATGAGGAGAGGCCAGAGGTGCAGTTAAATATTCTATAATGTGCATAGGACAGCTTGTAACATAGAATTGTCCAGTCCAACATGTTGATAGAGCAAAGCTTGAGAACCCTTCATTTGAGTGGTTTAGTAATGCAATGCTACCTTGACTTTAACTTGGTACGCCTAAGACAAAAGAGTGGCTCTTAGCTTGGTAAAACAACTTCAGAGAAGTGGGCCTTGTACAGAAGGCCATCCCAGGGCTCCTAACCCCATAGAATGAGTGCAGAATTGTCCTGGAAGATGATCTTTGTAGAGCACTGCCTGAAGTCATTAATTAATCACTGCCAGCCAGCTTGGGGACCAGCTTTCCAACCATACTCTTGAGGATAAGAAGCCCTGGCTGGGGAAATAGTCCCCAAATCTCAGTGATGAATTACATCAAAGGTCTACCTCTTGCTCGCTCCTTTGCACATCAACAAAGATCTCTGCTGCTGTCGTACTTATCTATTGGGCACACAATTAGTAGAAGCTCTAACAGTGTTTTGCTGTCATCTTAATATATATGTATACAAATACATGTACATATCATATAATATTCCATAGGGTAGGTGTGTGTATATATAATATGTATGTATATATAATGTATATATATATGTATGTATGTATATATGTAAGTATATATACATATCATATGGTCATACTAGAAGTTAAGGCACAAGAACTTGTCATTCGATTCTATCCAACTTCCTGAAGTCCAGAGGAAAGTAACTTTCCTATGGACCAGGAGAGACAAAAGAGTAATCATCCAGCATCAGATATGAGTGAACGCTGGAATTTGCCACCCATATTAACAGATGATATAGGGTTTATCTACAAAGAGATAAAGTGAGATGAGCTGAAGTGAGCTACTTTTAACTTGGTAAACTCTGTAAAAAGGACAATATAGAATTTAGAGACAGACAGAGCTACATCCTAGCTCTTCTAGGAACCTGTGCACTTATTACAAAAGGAAATGCAGTTATAAAGAACTGAACCTGCCTTGATCAACATAAATCCCAGAGCCTGTACGTGTAACCTGGGTAGGAAATTTCACTGATGGGGAAGTTTGATGGGACCCGGTGCCATGATTACAGGTATATCCAGCACTGACTATGGGGAAAGGAGGATGCTATTCTTATTTGCTGGAGAGGAGTAAGTTGCTTGTAATGAGGCTGGGTCTTGCTGTGCAGCACAGGTTGACATTGAACTTGCCACCTTCTTGTTTTAGCCTTCAAAGTGAAAAGCATGTGCCACCTTACCTAGCTCAAAAACCACTCTCCCATTCTCTTCAAATGCTGTAGTATAAGGGTTTATATAAACAACCTTATAGTCGACACTGTCTGCAGTGTGTTCCAGCTGAACTTTGCTGGAGTCCTGGGGATGTTCATAGAGCTACAGAAATTCACATGACCTGGCTCAGAGTGCAGCTGCCCCTGTACTCAGTATGAGCTTCTGGTCGCGTAACTCCCTGTCCGAGACCCACTTCCCAGGCAATGAGGCTCCTCGAACTTGGACCACTTACCCTCCTCTCTAACTTGATTTTAGTTTCCCTTCCTGGAAATGGGAAAATAAACCCTGTACATTCATGTGTGCATGTGTGTGTGTGTGTGTGCATACATGCACAATCTGGGTTTACTATTCCCTTCAAATAATTACCTAATTCTTTAAATTTGTTTATGTACGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATTTGTAGATACATCATTCTATGTAGCTCTGGCTGTCCTGGAATTCATTGTATAAACCAGTCTGGCTTTAAATTTACAGGGATCAGTCTGCCTCTCCCTCCTAAGTGCTGTGATCAAAGGTGTGTGCTACCACACTTGATGAATTACCTAATTCCTTTTATAGAAATCTGAATACAGAAAGCTCGGTCCCATAAAATGATGTTGATGAGGAAGAGGTGGCTCAGAGTTGAGACAGTAGTATGTGTGGAAGATAATCTCTTCTTCCTAAAATATGTATTTGTAAGCATCATATCTTATCTACTGGGTCCTGCAGTTGTCACTGCTCTCTGACCAATAAGCAAAAGCTACTGTCAGAATTAACTCAGGACCATCTCATTCCAAAATCTTTAGCTTAAATCATATTTTACACACACGCACGCACGCACGCACGCCCGCACGTACGTACGCACGCACATATTTAAATACTCAGAAAAATAAATGCCTGAAAGATTCTGTCACATGAATAGCTAGCTATCTTTGATGATTATACCATTGTTTCTTCCAGATGAACTCTCTATCTGAACATGTACTGTTTTTGATAACTACCGTGATACCCAAGAGACCTTTCCAACCAAGGCTGGGTATGGTACCAGCAACCCGGTATCTTTGGACCTCCTGTGCTCCAATAGGCTTTCTTGGCTAGAAGAAACTGCTGCTCAAAGCTAATGCATACATTCACAGCAGTCCTTGCGCTCAGCTTCTTCTGCTTTCTGTTGCTCCCAG
Seq C2 exon
GGGAATGTAATTATGGAGGCAGAGTGACTGACGACAAAGACAGGCGTCTCCTGCTGTCCCTGCTGTCCACATTCTACTGTAAGGAAATTGAGACAGATCACTACTACATTGCTCCAGGACAGCCGTACTTCATCCCTCCCCACGGCTCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054843:ENSRNOT00000080401:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]