GgaINT0013873 @ galGal3
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15704414-15705731:-
Coord C1 exon
chr14:15705615-15705731
Coord A exon
chr14:15704569-15705614
Coord C2 exon
chr14:15704414-15704568
Length
1046 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
TTTTCTTGGTCCTTTCCCAGGGG
3' ss Score
9.03
Exon sequences
Seq C1 exon
GTTGGAATATTCCATATGAGTTCAACGAGTCTGACCTCAGGATCAGCATGCAGCAGATACACATGTTTTTGAATGAATATGAAGAAGTCCCTTTTGAAGCTCTGACATATCTAACAG
Seq A exon
GTATAGGCGTTGTGCCCTCTAACGTATTTTGATTTGTACCAGTTGAAGGTACCTCGCCATGATAAACTGATGAGTGCTTGCTAAATGCAGTGGCTTCCATTTGGGTTTATTTTCTTGGCCTTCCGCAAAACTGCAAGAGGGATCCCAGACCTTCAGATTTGATTGCTGTCTTGGCTTAGGTGTGGCTGCCGACCTGCTGGCCAAGCAGTGTCTTCTTGTCAAGCAGTGAATGGCCTGTGCTTCACTGCAGCTGGTCTGTGTGTCAGACTCTGACAGAGAAACCATTGGTGGTTGGCTGTAGGGTAGGATGTGGTCGTCCTCTCCGTTTAAAGCAGTAGGCGTTGACCTGGATAAGCAACTCTGTGGCTGTGACAGCTGGCTTTGTCCAGGAAGGTAACATGTAGTTGATACCTCCTTTGTCAGCCTTACAAAGATAATTCCTGGTTTTTGCAATTGTTACAACTAGCTTTATGAAAAATAAAGTAGGGAGTCAGGATTTAAGTAATAACTGTGATCTTTCAGCTGTTTCCTCTACTTTATATCAGTGCAAACCTCCCCTCATTGCTTCTTCATTACTGAGGTCTCTCCCACCCGTTCTGTATACTGATGATCCCCTTTCTACCATACTTGTGCATAATCAGCTCTGAGTTTGCATTAAAGGAACGAGACAAGGATCAGCTATACAGCACCACTCAGATCTGGACAGTTCTAAACCTTCTAAAAGCAAAATAGATGTCACTTGAAATGTGTCATTATTCACTGCAATATAAGCAGCAATTTCTCAAGCCAACTTAGTGTTCCTTATAAATGTTACCATCGAGATGCACAGATTGGGTCCAAAGTCCCAAAGATGTTAAAGTGCATAATTCCATTGAATCCAAAGTTTTTAGGTACCATAATTCTACTGATTCAATGGTACCTAAAAATTTCTGAGGATCTGGAGCCTCAGGATTTCAACTTACTGGAGGTGTATGTTGACGTAAAACAATTTTTATTTGTTCATTAAATTTAATCTTTTCATGCTGATTTTCTTGGTCCTTTCCCAG
Seq C2 exon
GGGAATGTAACTATGGGGGGAGAGTAACAGACGATAAAGACAGGCGGCTTCTTCTGTCCCTTCTGTCTACAGTCTACAACAAGGATATAGAGCAGGACAAGTACATGCTTGCACCTGGCGGTGACTACTATATCCCACCACATGGTCCATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCATATGAGTTCAACGAGTCTGA
R:
CCATGTGGTGGGATATAGTAGTCAC
Band lengths:
254-1300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]