DreINT0009324 @ danRer10
Intron Retention
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39613823-39616259:+
Coord C1 exon
chr24:39613823-39613980
Coord A exon
chr24:39613981-39616091
Coord C2 exon
chr24:39616092-39616259
Length
2111 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
ATGATTGCATTTATATGTAGAGC
3' ss Score
4.73
Exon sequences
Seq C1 exon
GAGAGTGTAATTATGGTGGGAGGGTGACTGACGATAAGGACCGGAGACTGCTGATGTCTCTCCTCTCCATCTTCTACAGCTGGCAGCTCATTCAGCAGGACCAGTATCGTGTGTGTGAGGGAGATCTGTATTATGTGCCTTCACATGCTCCTTACCAG
Seq A exon
GTACATTCAAACACCTGTTGTTTATGAATTAAAAAAATAGCTACATCATGCATCTTAAATTAAAAATTCTGCCAGTATTTACTTCCAGGGGGGTTTTCTGTGAGCTGTGATTGTTGTGAAGTTGTATAGCACAATGTTTAAGAAGCTCTTTTGCAACCAGTGATTAGAAACTGCACAAAAGTGACAAAAAAACTGTCATAAAAGCAGTTTGATGCTGTTGTACCCAGTTTTCTGATGTCTTCATTTAATTCCCTCATTAAATAAAAAATCCAGGATCTTCTCTTCGCTATATTTCTTTGTTAGAGTTTTGTTTAGGCCCATCTATTGTAATGTCTTTCAAGGAATAATTAGATTACCACAAGGTATCTTGATGAGTTTTGCATATTAAGCCAATGTCTACTCCATTTTTATTAATAAAATAAATCAAGTGAAAAGATGAATAAACAAATACAAGAACAAAACAAAATGCTTTACTTTATTCTCCATTGAAAATGAAGGGCCTACGACTTAGAGCAGGGGTAGGGAACCTATGGCTCGGGAGCCACATTTGGCTCTTTGACCAAAATGTGTGGCTCTCCAGCTGTCTCCCTTCAATAAAAAATTAAAACTGACACAAAAAATTAGTTTCCTATTGAAAATACAATTAAAGTAACCTTTTTATTTTATATTTTTACAGCAAAATGAATAAAAATAAAATGACATTTCAATGCGCATGTGCAGCGCTGTGGATTAACTTGAATCGGACACCAATAAAGGTTATGCAACTTCCATTTCTATGGGTGCTTTCACACCTGTGAATCGATTCATTTGTTCCGAAACAGAGATTACAATTGTTACATTGTTGCTCTTTGCTCTTGGAGCGGTTCGCTTTCACACTGCAAAGTTTATAATCGGACCAAAAGAGCTAAAACAAGCCACGTGCGAGTAAATTGGTCAGTGTCAGGGTTTATTTTGCAGCGTCCCGCTAAGCTGTCAGGAGAGGTGGTGGTTTGGTGGTGATTGACAGGGTGCGCGCGCGACTTCTCTGAGGAGAGACCAATGGGAGAGACGCGGTGGGGAGGGGTGAGAAGGGTGTGTGACGATGCCTATTTGATGAACGGGAGGGAGACGCGAGATTACCGGGAGATCATCACTCGTTTGCGGGCATCCGGAGACTCGCGAAACTTCCTGCCCTACTCATAATTCTCTCTTCATATAGCCGTAAGCCTATTACACATCCATAAAACACTATGATATAACCGCGCTTTCTCACTTCGTTTCAATCGAGCCGAGACCACCTCATTCAAGCGATCTCGGAGCGATTACTTTGGTGCAGAACAGAGCGCGATTGCCCTGTTCACATATGCCAAACGAACCGCGCTAACTGGGCAATCGAGACACGTTCCGAAACAAAAGTGTAGGTGTGAAAGCACCCTATGTTAACCTTGCGCACGTAAATTCAAACCACATTCATGAGTGCTGATGGCGAAAAGAAAACAATTCTATAAATTAGCCTTTCTTAATACATGGACTTGCTCAACATGCTTATGGCTCTCTAAAAAATGCATTTGCCAAAAATAATCAAAAATGGCTCTTTGCCCAAAAAAGGTTCCTGAGCCCTGACTTAGAGTATACAAAAATCTAAGTGCTCTGCTGGTCTGTCTGTCGCAGCCTTTTATACAGTATTCAAGCTTTTAAATACTTGTGTGCCTTTAATTTATTCAATCATTTTCTTTCCGGCTTAGTCCCTTTATTAATCAGGGGTCGCCACAGCGGAATGAACCACCAACTTATTCAGCCGATTTTTTTAGGCAGCGGATGTCTTTCCAACTGCAACATGACACCGGGATACACTCTTGCATTCACACACATACACTACGGCCAATTTAGCTTATTCAATTCCCCTATATCGCATGTGTTTGGACTGTGGGGGAAATCGGAGAACCAGGAGGAAACCCACACCAACACGGGGAGAACATGCAAACGCCACACAGAAACGCCAACTGACCCAGCTAGGGCTCGAACTAGCGACCTTCTTGCTGTGAGGCGATTGAAGTTATTACTATCAAACTATTAATTGCAAATCTTTGATGACTTTCTCAAATCTCATCCATGATTGCATTTATATGTAG
Seq C2 exon
AGCTATGTGGACTACATCCGCAACCTGCCTATCAGTGCTGAGCCTGAGGTCTTCGGCCTGCACAGCAATGCTAATATCACCAAAGACAACCAGGAAACCAACCAGCTGTTAGACGGAGTGCTGCTAACTCTACCAAGACAAACCAACAGCGGAGCCAAATCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468:ENSDART00000142998:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]