GgaINT0013874 @ galGal3
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15703524-15704568:-
Coord C1 exon
chr14:15704414-15704568
Coord A exon
chr14:15703692-15704413
Coord C2 exon
chr14:15703524-15703691
Length
722 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTTAAATGTTTCTTTTACAGTCT
3' ss Score
9.7
Exon sequences
Seq C1 exon
GGGAATGTAACTATGGGGGGAGAGTAACAGACGATAAAGACAGGCGGCTTCTTCTGTCCCTTCTGTCTACAGTCTACAACAAGGATATAGAGCAGGACAAGTACATGCTTGCACCTGGCGGTGACTACTATATCCCACCACATGGTCCATATGAG
Seq A exon
GTGAGGAGACAGCACATGTAAATTCTCCCTTTAATTGTTGGGAAAAAGCTCGTCTATGCTGCGCTTTGATACACTGAATACAATAAATAAATATACAGGAAATAAAAATGTGAGATTGCAAAGCCATGCCAGACTGCATCTTTTGAAATATGAATTTGGTACTTAATATCTAACATGTGGCAGTGGAGATGGAGTGATGTATTCCAGTATTCTGATCAAGTTGTTGTTGCAACTACTGTGCAGATTTCCAGGATACTTCTGAGAAGATGACAGGCGTAAGGCTTCAGGATTGTACAGGGTAATTTGGTACCCTCTTGGGACCATTTATGTCTTGATAGCAGTGATCACAGAGAGAGAGTAGAAAGGCAGGCATGTATTCCATGTTTGGTCCCTTCTTCCCTTCTGCTGATGTCTCAGAGCTCACCAATAGATGGGATCAGAACACAGTTGTTTAGCCTGCAGTTGTAAGGATTAAGCACTCTCTGCATTTACTTTTTGTTGCATTTCTTTCTCTTGCTACTTATGAGAGGGTAGTAAGGAGTCAGTGAGTCTCTGAACCATTCAAAACTGCTGTGTGGACTGGGTAAGTCAATTCCTGAATGATTTAGGTGGGAGCTTACATCTGTGATTCTACATGGGAAAGTTCTAACCAAGTTGGATTTACTGATGGTTTATGAATATATCACTGCCTAATTTCTGTTATTTAAATGTTTCTTTTACAG
Seq C2 exon
TCTTACATTGAATACCTAAGAAGCTTACCAAGTGTGACACACCCTGAGGTGTTTGGGCTTCATGAGAACGCAGACATTACCAAGGATACCCAGGAGACTAACCAGCTTTTCAGCGGAGTGCTCCTGACTTTGCCTAGAGTGGCAGGGGGAGGTGGCAGATCTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.089
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.2=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAGAGTAACAGACGATA
R:
CTGAGGAGATCTGCCACCTCC
Band lengths:
308-1030
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]