MmuINT1008813 @ mm10
Intron Retention
Gene
ENSMUSG00000052273 | Dnah3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:119930102-119931572:-
Coord C1 exon
chr7:119931418-119931572
Coord A exon
chr7:119930270-119931417
Coord C2 exon
chr7:119930102-119930269
Length
1148 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ATTGAAGATTTCCTTTCCAGTCT
3' ss Score
3.16
Exon sequences
Seq C1 exon
GTGAATGTAATTATGGAGGCAGAGTGACTGATGACAAAGATAGGCGTCTCCTGCTGTCCCTCCTGTCCATGTTCTACTGTAAAGAAATTGAAACAGATAACTATCACATTGCTCCTGGAGATGCTTATGTCATCCCCCCCTATGGCTCCTACCAG
Seq A exon
GTAAAGGATGCTCCTCTGTCTTTGCCCTCAGAGAGACTGAAGCTAGGGGATACAGTGTTTCCAAGGAAAGCCCAGGGATTCACACTTGGGCTTCCTTACTGGGGTCCATGATCTGTTATTAATATTCCATGGAGCCTCCAAGAAAGATATTGTTGTCACTGTTTAATGAATGCTGAGTGTTAGGGGCAAGTGGGGTCTTTCAAGATATGGATTCTATCTGGAGCAGTGAAGAGAGAAAGTGACAGTTAAAGTGAAGGCTTCTGAGGATTGGGAGATGGCTCAGTGGACAAAGTGCTTGACATGCAAGTGTCAGGACTAGAGTTTGGATCGTGCAGAGTCCACACACTAAATGTGGTACTTTATACCTATAATCCCAGCACACATATGGCAGGAGGGAGGCAGAGATAGGGAGATCGCTGGAAGCCTGTGGTCCAGCTAGCCTGATAAACACAGTGATGAAGAACAAGAGACCATAACTCTAAGGAGGTAGAAGATAAGAACCAACACTCAAGGTTGTCACCTGACCTCCACATGCACTCCATGGCACATACATACCTGCGCGCGCACGTATACACACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGACAGACAGACAGACAGACAGACAGACAGACAGAGAGAGAGACCTTGGGCTACATATTAAGATGTTGTCTTTTTTTTTAATGGGTAAGGAGAAAGAACAGAACAACTAGATAAGAAAATAAGGGAGATATAAAAACAAGAACTGTGGAGGAAGGCTGCAAAAGACCCCACTCTTCCCACTATGAGCCAATTGGGATTTTAGACACCTGGCTCCAGGTTACAGTTAGTTTGCAATTGAACACTGGGATTCAAACCCAGATCTATGTAACTCTAAAGCTGACTATTTAGGAACAGAGAGACGTCCAAAGGTGGGAAGAAAACTGCTCAAGCCTATAAGATGCTCTTCAGAGCACTGCAGAAGGATAGCCTGGGGTTTACTCACCTGTCCTGGCTAGCAAATGGAGATAGTGCTACTGACATGGTGGGGTTCCTTTTTGAGATGGGTTCAGCCACACCCTGGGTCACCTCATAGGACCTCAGTGGATCTACACTGATACCAATTGAAGATTTCCTTTCCAG
Seq C2 exon
TCTTACATTGAGTATCTCAGGACCCTCCCCATCACAGCACACCCTGAAGTATTTGGTCTCCATGAGAATGCTGACATCACCAAGGACAACCAGGAAACCAACCAGCTCTTCCAAGGAGTGCTGCTGACCCTGCCGAGACAGTCCGGAGGGAGTGGGAAGTCTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273:ENSMUST00000208701:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.2=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTAATTATGGAGGCAGAGTGA
R:
GGAGACTTCCCACTCCCTCC
Band lengths:
318-1466
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types