DreINT0009795 @ danRer10
Intron Retention
Gene
ENSDARG00000102325 | EHMT2
Description
euchromatic histone-lysine N-methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
Coordinates
chr19:1338313-1338831:-
Coord C1 exon
chr19:1338716-1338831
Coord A exon
chr19:1338400-1338715
Coord C2 exon
chr19:1338313-1338399
Length
316 bp
Sequences
Splice sites
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
3' ss Seq
GTGTGTGTGTGTGTGTTCAGGGT
3' ss Score
9.76
Exon sequences
Seq C1 exon
GATCATCGTCTCCTGCAGGAGTTTAATAAGATCGAGCCGCCGCTGATCTTCGAGTGTAACATGGCCTGCTCCTGCCACAAGACGTGCAAGAACCGCGTGGTGCAGGCTGGAATCAA
Seq A exon
GTCAGTTGCCTGTCGTGTGTGTGTGTGTGTGTGTGTGTGCATGTCTGCATTTATGTGTGTGTGTTTAGGTCTGTTGTTTGTGTTGTTATTTGTTTTTTGTGTGTGTATTTCTGTCCGTTTGTAATGTGTTTATGTGTGTTTCTAATGTGTGTGTGTGTCTGTTGTTGTTCTCTTACGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGTGTGTGTGTGTGTAACGTGTTTTGTGTTGGTCTTTGTTTGTAATGTGTTTTTTCGTGTTTATATGTGTTTCTAATATGTGTGTGTGTGTGTGTGTGTGTTCAG
Seq C2 exon
GGTGCGTCTCCAGCTGTACCGCACAGAGAAGATGGGTTGGGGTGTTCGAGCTCTTCAAGATATTCCTCAAGGAAGCTTCATCTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102325:ENSDART00000168138:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PD(29.2=79.5)
A:
NA
C2:
PF0085623=SET=PU(15.9=56.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCATCGTCTCCTGCAGGA
R:
TCGCAGATGAAGCTTCCTTGA
Band lengths:
203-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]